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FAM71B (family with sequence similarity 71, member B)

Identity

Alias_namesfamily with sequence similarity 71, member B
Alias_symbol (synonym)MGC26988
Other alias-
HGNC (Hugo) FAM71B
LocusID (NCBI) 153745
Atlas_Id 63228
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 156589344 and ends at 156593279 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71B   28397
Cards
Entrez_Gene (NCBI)FAM71B  153745  family with sequence similarity 71, member B
Aliases
GeneCards (Weizmann)FAM71B
Ensembl hg19 (Hinxton)ENSG00000170613 [Gene_View]  chr5:156589344-156593279 [Contig_View]  FAM71B [Vega]
Ensembl hg38 (Hinxton)ENSG00000170613 [Gene_View]  chr5:156589344-156593279 [Contig_View]  FAM71B [Vega]
ICGC DataPortalENSG00000170613
TCGA cBioPortalFAM71B
AceView (NCBI)FAM71B
Genatlas (Paris)FAM71B
WikiGenes153745
SOURCE (Princeton)FAM71B
Genetics Home Reference (NIH)FAM71B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM71B  -     chr5:156589344-156593279 -  5q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM71B  -     5q33.3   [Description]    (hg38-Dec_2013)
EnsemblFAM71B - 5q33.3 [CytoView hg19]  FAM71B - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIFAM71B [Mapview hg19]  FAM71B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF465821 AK057543 AY973323 BC022035 BC025397
RefSeq transcript (Entrez)NM_130899
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)FAM71B
Cluster EST : UnigeneHs.666099 [ NCBI ]
CGAP (NCI)Hs.666099
Alternative Splicing GalleryENSG00000170613
Gene ExpressionFAM71B [ NCBI-GEO ]   FAM71B [ EBI - ARRAY_EXPRESS ]   FAM71B [ SEEK ]   FAM71B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153745
GTEX Portal (Tissue expression)FAM71B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC56
Splice isoforms : SwissVarQ8TC56
PhosPhoSitePlusQ8TC56
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71B
DMDM Disease mutations153745
Blocks (Seattle)FAM71B
SuperfamilyQ8TC56
Human Protein AtlasENSG00000170613
Peptide AtlasQ8TC56
HPRD14516
IPIIPI00382867   IPI00383107   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC56
IntAct (EBI)Q8TC56
FunCoupENSG00000170613
BioGRIDFAM71B
STRING (EMBL)FAM71B
ZODIACFAM71B
Ontologies - Pathways
QuickGOQ8TC56
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71B
Atlas of Cancer Signalling NetworkFAM71B
Wikipedia pathwaysFAM71B
Orthology - Evolution
OrthoDB153745
GeneTree (enSembl)ENSG00000170613
Phylogenetic Trees/Animal Genes : TreeFamFAM71B
HOVERGENQ8TC56
HOGENOMQ8TC56
Homologs : HomoloGeneFAM71B
Homology/Alignments : Family Browser (UCSC)FAM71B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71B
dbVarFAM71B
ClinVarFAM71B
1000_GenomesFAM71B 
Exome Variant ServerFAM71B
ExAC (Exome Aggregation Consortium)FAM71B (select the gene name)
Genetic variants : HAPMAP153745
Genomic Variants (DGV)FAM71B [DGVbeta]
DECIPHER (Syndromes)5:156589344-156593279  ENSG00000170613
CONAN: Copy Number AnalysisFAM71B 
Mutations
ICGC Data PortalFAM71B 
TCGA Data PortalFAM71B 
Broad Tumor PortalFAM71B
OASIS PortalFAM71B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71B
DgiDB (Drug Gene Interaction Database)FAM71B
DoCM (Curated mutations)FAM71B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71B (select a term)
intoGenFAM71B
Cancer3DFAM71B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71B
Genetic Testing Registry FAM71B
NextProtQ8TC56 [Medical]
TSGene153745
GENETestsFAM71B
Huge Navigator FAM71B [HugePedia]
snp3D : Map Gene to Disease153745
BioCentury BCIQFAM71B
ClinGenFAM71B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153745
Chemical/Pharm GKB GenePA142671832
Clinical trialFAM71B
Miscellaneous
canSAR (ICR)FAM71B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71B
EVEXFAM71B
GoPubMedFAM71B
iHOPFAM71B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:17 CET 2017

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