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FAM71C (family with sequence similarity 71, member C)

Identity

Alias_namesfamily with sequence similarity 71, member C
Alias_symbol (synonym)MGC39520
Other alias-
HGNC (Hugo) FAM71C
LocusID (NCBI) 196472
Atlas_Id 63229
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 100041528 and ends at 100043892 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SCYL2 (12q23.1) / FAM71C (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71C   28594
Cards
Entrez_Gene (NCBI)FAM71C  196472  family with sequence similarity 71, member C
Aliases
GeneCards (Weizmann)FAM71C
Ensembl hg19 (Hinxton)ENSG00000180219 [Gene_View]  chr12:100041528-100043892 [Contig_View]  FAM71C [Vega]
Ensembl hg38 (Hinxton)ENSG00000180219 [Gene_View]  chr12:100041528-100043892 [Contig_View]  FAM71C [Vega]
ICGC DataPortalENSG00000180219
TCGA cBioPortalFAM71C
AceView (NCBI)FAM71C
Genatlas (Paris)FAM71C
WikiGenes196472
SOURCE (Princeton)FAM71C
Genetics Home Reference (NIH)FAM71C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM71C  -     chr12:100041528-100043892 +  12q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM71C  -     12q23.1   [Description]    (hg38-Dec_2013)
EnsemblFAM71C - 12q23.1 [CytoView hg19]  FAM71C - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM71C [Mapview hg19]  FAM71C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA401734 AK312767 AW181907 BC031221 DB055853
RefSeq transcript (Entrez)NM_153364
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_029860 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)FAM71C
Cluster EST : UnigeneHs.591011 [ NCBI ]
CGAP (NCI)Hs.591011
Alternative Splicing GalleryENSG00000180219
Gene ExpressionFAM71C [ NCBI-GEO ]   FAM71C [ EBI - ARRAY_EXPRESS ]   FAM71C [ SEEK ]   FAM71C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196472
GTEX Portal (Tissue expression)FAM71C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEG0
Splice isoforms : SwissVarQ8NEG0
PhosPhoSitePlusQ8NEG0
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71C
DMDM Disease mutations196472
Blocks (Seattle)FAM71C
SuperfamilyQ8NEG0
Human Protein AtlasENSG00000180219
Peptide AtlasQ8NEG0
HPRD17539
IPIIPI00168667   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEG0
IntAct (EBI)Q8NEG0
FunCoupENSG00000180219
BioGRIDFAM71C
STRING (EMBL)FAM71C
ZODIACFAM71C
Ontologies - Pathways
QuickGOQ8NEG0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM71C
Atlas of Cancer Signalling NetworkFAM71C
Wikipedia pathwaysFAM71C
Orthology - Evolution
OrthoDB196472
GeneTree (enSembl)ENSG00000180219
Phylogenetic Trees/Animal Genes : TreeFamFAM71C
HOVERGENQ8NEG0
HOGENOMQ8NEG0
Homologs : HomoloGeneFAM71C
Homology/Alignments : Family Browser (UCSC)FAM71C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71C
dbVarFAM71C
ClinVarFAM71C
1000_GenomesFAM71C 
Exome Variant ServerFAM71C
ExAC (Exome Aggregation Consortium)FAM71C (select the gene name)
Genetic variants : HAPMAP196472
Genomic Variants (DGV)FAM71C [DGVbeta]
DECIPHER (Syndromes)12:100041528-100043892  ENSG00000180219
CONAN: Copy Number AnalysisFAM71C 
Mutations
ICGC Data PortalFAM71C 
TCGA Data PortalFAM71C 
Broad Tumor PortalFAM71C
OASIS PortalFAM71C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71C
DgiDB (Drug Gene Interaction Database)FAM71C
DoCM (Curated mutations)FAM71C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71C (select a term)
intoGenFAM71C
Cancer3DFAM71C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71C
Genetic Testing Registry FAM71C
NextProtQ8NEG0 [Medical]
TSGene196472
GENETestsFAM71C
Huge Navigator FAM71C [HugePedia]
snp3D : Map Gene to Disease196472
BioCentury BCIQFAM71C
ClinGenFAM71C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196472
Chemical/Pharm GKB GenePA143485460
Clinical trialFAM71C
Miscellaneous
canSAR (ICR)FAM71C (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71C
EVEXFAM71C
GoPubMedFAM71C
iHOPFAM71C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:17 CET 2017

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