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FAM71D (family with sequence similarity 71 member D)

Identity

Alias_namesC14orf54
chromosome 14 open reading frame 54
family with sequence similarity 71, member D
Other alias
HGNC (Hugo) FAM71D
LocusID (NCBI) 161142
Atlas_Id 56161
Location 14q23.3  [Link to chromosome band 14q23]
Location_base_pair Starts at 67189393 and ends at 67228550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MPP5 (14q23.3) / FAM71D (14q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71D   20101
Cards
Entrez_Gene (NCBI)FAM71D  161142  family with sequence similarity 71 member D
AliasesC14orf54
GeneCards (Weizmann)FAM71D
Ensembl hg19 (Hinxton)ENSG00000172717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172717 [Gene_View]  chr14:67189393-67228550 [Contig_View]  FAM71D [Vega]
ICGC DataPortalENSG00000172717
TCGA cBioPortalFAM71D
AceView (NCBI)FAM71D
Genatlas (Paris)FAM71D
WikiGenes161142
SOURCE (Princeton)FAM71D
Genetics Home Reference (NIH)FAM71D
Genomic and cartography
GoldenPath hg38 (UCSC)FAM71D  -     chr14:67189393-67228550 +  14q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM71D  -     14q23.3   [Description]    (hg19-Feb_2009)
EnsemblFAM71D - 14q23.3 [CytoView hg19]  FAM71D - 14q23.3 [CytoView hg38]
Mapping of homologs : NCBIFAM71D [Mapview hg19]  FAM71D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093449 AK302154 BC037380 BC050401 DB056257
RefSeq transcript (Entrez)NM_173526
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM71D
Cluster EST : UnigeneHs.733286 [ NCBI ]
CGAP (NCI)Hs.733286
Alternative Splicing GalleryENSG00000172717
Gene ExpressionFAM71D [ NCBI-GEO ]   FAM71D [ EBI - ARRAY_EXPRESS ]   FAM71D [ SEEK ]   FAM71D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161142
GTEX Portal (Tissue expression)FAM71D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9W8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9W8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9W8
Splice isoforms : SwissVarQ8N9W8
PhosPhoSitePlusQ8N9W8
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71D
DMDM Disease mutations161142
Blocks (Seattle)FAM71D
SuperfamilyQ8N9W8
Human Protein AtlasENSG00000172717
Peptide AtlasQ8N9W8
HPRD12653
IPIIPI00167833   IPI00396973   IPI00908492   IPI01025666   IPI01025532   IPI01025859   IPI00980742   IPI01012268   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9W8
IntAct (EBI)Q8N9W8
FunCoupENSG00000172717
BioGRIDFAM71D
STRING (EMBL)FAM71D
ZODIACFAM71D
Ontologies - Pathways
QuickGOQ8N9W8
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71D
Atlas of Cancer Signalling NetworkFAM71D
Wikipedia pathwaysFAM71D
Orthology - Evolution
OrthoDB161142
GeneTree (enSembl)ENSG00000172717
Phylogenetic Trees/Animal Genes : TreeFamFAM71D
HOVERGENQ8N9W8
HOGENOMQ8N9W8
Homologs : HomoloGeneFAM71D
Homology/Alignments : Family Browser (UCSC)FAM71D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71D
dbVarFAM71D
ClinVarFAM71D
1000_GenomesFAM71D 
Exome Variant ServerFAM71D
ExAC (Exome Aggregation Consortium)FAM71D (select the gene name)
Genetic variants : HAPMAP161142
Genomic Variants (DGV)FAM71D [DGVbeta]
DECIPHERFAM71D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM71D 
Mutations
ICGC Data PortalFAM71D 
TCGA Data PortalFAM71D 
Broad Tumor PortalFAM71D
OASIS PortalFAM71D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71D
DgiDB (Drug Gene Interaction Database)FAM71D
DoCM (Curated mutations)FAM71D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71D (select a term)
intoGenFAM71D
Cancer3DFAM71D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71D
Genetic Testing Registry FAM71D
NextProtQ8N9W8 [Medical]
TSGene161142
GENETestsFAM71D
Target ValidationFAM71D
Huge Navigator FAM71D [HugePedia]
snp3D : Map Gene to Disease161142
BioCentury BCIQFAM71D
ClinGenFAM71D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161142
Chemical/Pharm GKB GenePA162387759
Clinical trialFAM71D
Miscellaneous
canSAR (ICR)FAM71D (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71D
EVEXFAM71D
GoPubMedFAM71D
iHOPFAM71D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:00:54 CEST 2017

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