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FAM71E1 (family with sequence similarity 71 member E1)

Identity

Alias_namesfamily with sequence similarity 71, member E1
Other alias-
HGNC (Hugo) FAM71E1
LocusID (NCBI) 112703
Atlas_Id 63231
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50466785 and ends at 50476746 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71E1   25107
Cards
Entrez_Gene (NCBI)FAM71E1  112703  family with sequence similarity 71 member E1
Aliases
GeneCards (Weizmann)FAM71E1
Ensembl hg19 (Hinxton)ENSG00000142530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142530 [Gene_View]  chr19:50466785-50476746 [Contig_View]  FAM71E1 [Vega]
ICGC DataPortalENSG00000142530
TCGA cBioPortalFAM71E1
AceView (NCBI)FAM71E1
Genatlas (Paris)FAM71E1
WikiGenes112703
SOURCE (Princeton)FAM71E1
Genetics Home Reference (NIH)FAM71E1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM71E1  -     chr19:50466785-50476746 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM71E1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblFAM71E1 - 19q13.33 [CytoView hg19]  FAM71E1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIFAM71E1 [Mapview hg19]  FAM71E1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125745 AK131032 AW665311 BC004941 BC012203
RefSeq transcript (Entrez)NM_001308429 NM_138411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM71E1
Cluster EST : UnigeneHs.448941 [ NCBI ]
CGAP (NCI)Hs.448941
Alternative Splicing GalleryENSG00000142530
Gene ExpressionFAM71E1 [ NCBI-GEO ]   FAM71E1 [ EBI - ARRAY_EXPRESS ]   FAM71E1 [ SEEK ]   FAM71E1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71E1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112703
GTEX Portal (Tissue expression)FAM71E1
Human Protein AtlasENSG00000142530-FAM71E1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPT2
Splice isoforms : SwissVarQ6IPT2
PhosPhoSitePlusQ6IPT2
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71E1
DMDM Disease mutations112703
Blocks (Seattle)FAM71E1
SuperfamilyQ6IPT2
Human Protein Atlas [tissue]ENSG00000142530-FAM71E1 [tissue]
Peptide AtlasQ6IPT2
HPRD18718
IPIIPI00304876   IPI00450956   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPT2
IntAct (EBI)Q6IPT2
FunCoupENSG00000142530
BioGRIDFAM71E1
STRING (EMBL)FAM71E1
ZODIACFAM71E1
Ontologies - Pathways
QuickGOQ6IPT2
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71E1
Atlas of Cancer Signalling NetworkFAM71E1
Wikipedia pathwaysFAM71E1
Orthology - Evolution
OrthoDB112703
GeneTree (enSembl)ENSG00000142530
Phylogenetic Trees/Animal Genes : TreeFamFAM71E1
HOVERGENQ6IPT2
HOGENOMQ6IPT2
Homologs : HomoloGeneFAM71E1
Homology/Alignments : Family Browser (UCSC)FAM71E1
Gene fusions - Rearrangements
Tumor Fusion PortalFAM71E1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71E1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71E1
dbVarFAM71E1
ClinVarFAM71E1
1000_GenomesFAM71E1 
Exome Variant ServerFAM71E1
ExAC (Exome Aggregation Consortium)ENSG00000142530
GNOMAD BrowserENSG00000142530
Genetic variants : HAPMAP112703
Genomic Variants (DGV)FAM71E1 [DGVbeta]
DECIPHERFAM71E1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM71E1 
Mutations
ICGC Data PortalFAM71E1 
TCGA Data PortalFAM71E1 
Broad Tumor PortalFAM71E1
OASIS PortalFAM71E1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71E1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71E1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71E1
DgiDB (Drug Gene Interaction Database)FAM71E1
DoCM (Curated mutations)FAM71E1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71E1 (select a term)
intoGenFAM71E1
Cancer3DFAM71E1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM71E1
MedgenFAM71E1
Genetic Testing Registry FAM71E1
NextProtQ6IPT2 [Medical]
TSGene112703
GENETestsFAM71E1
Target ValidationFAM71E1
Huge Navigator FAM71E1 [HugePedia]
snp3D : Map Gene to Disease112703
BioCentury BCIQFAM71E1
ClinGenFAM71E1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112703
Chemical/Pharm GKB GenePA162387782
Clinical trialFAM71E1
Miscellaneous
canSAR (ICR)FAM71E1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71E1
EVEXFAM71E1
GoPubMedFAM71E1
iHOPFAM71E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:38:34 CET 2017

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