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FAM71E2 (family with sequence similarity 71 member E2)

Identity

Alias_namesC19orf16
chromosome 19 open reading frame 16
family with sequence similarity 71, member E2
Alias_symbol (synonym)DKFZp434G1729
Other alias
HGNC (Hugo) FAM71E2
LocusID (NCBI) 284418
Atlas_Id 63232
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55354908 and ends at 55363252 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71E2   25278
Cards
Entrez_Gene (NCBI)FAM71E2  284418  family with sequence similarity 71 member E2
AliasesC19orf16
GeneCards (Weizmann)FAM71E2
Ensembl hg19 (Hinxton)ENSG00000180043 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180043 [Gene_View]  chr19:55354908-55363252 [Contig_View]  FAM71E2 [Vega]
ICGC DataPortalENSG00000180043
TCGA cBioPortalFAM71E2
AceView (NCBI)FAM71E2
Genatlas (Paris)FAM71E2
WikiGenes284418
SOURCE (Princeton)FAM71E2
Genetics Home Reference (NIH)FAM71E2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM71E2  -     chr19:55354908-55363252 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM71E2  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblFAM71E2 - 19q13.42 [CytoView hg19]  FAM71E2 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIFAM71E2 [Mapview hg19]  FAM71E2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127979 AL834316 BC031875
RefSeq transcript (Entrez)NM_001145402
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM71E2
Cluster EST : UnigeneHs.528319 [ NCBI ]
CGAP (NCI)Hs.528319
Alternative Splicing GalleryENSG00000180043
Gene ExpressionFAM71E2 [ NCBI-GEO ]   FAM71E2 [ EBI - ARRAY_EXPRESS ]   FAM71E2 [ SEEK ]   FAM71E2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71E2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284418
GTEX Portal (Tissue expression)FAM71E2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5Q1
Splice isoforms : SwissVarQ8N5Q1
PhosPhoSitePlusQ8N5Q1
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71E2
DMDM Disease mutations284418
Blocks (Seattle)FAM71E2
SuperfamilyQ8N5Q1
Human Protein AtlasENSG00000180043
Peptide AtlasQ8N5Q1
IPIIPI00787428   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5Q1
IntAct (EBI)Q8N5Q1
FunCoupENSG00000180043
BioGRIDFAM71E2
STRING (EMBL)FAM71E2
ZODIACFAM71E2
Ontologies - Pathways
QuickGOQ8N5Q1
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71E2
Atlas of Cancer Signalling NetworkFAM71E2
Wikipedia pathwaysFAM71E2
Orthology - Evolution
OrthoDB284418
GeneTree (enSembl)ENSG00000180043
Phylogenetic Trees/Animal Genes : TreeFamFAM71E2
HOVERGENQ8N5Q1
HOGENOMQ8N5Q1
Homologs : HomoloGeneFAM71E2
Homology/Alignments : Family Browser (UCSC)FAM71E2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71E2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71E2
dbVarFAM71E2
ClinVarFAM71E2
1000_GenomesFAM71E2 
Exome Variant ServerFAM71E2
ExAC (Exome Aggregation Consortium)FAM71E2 (select the gene name)
Genetic variants : HAPMAP284418
Genomic Variants (DGV)FAM71E2 [DGVbeta]
DECIPHERFAM71E2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM71E2 
Mutations
ICGC Data PortalFAM71E2 
TCGA Data PortalFAM71E2 
Broad Tumor PortalFAM71E2
OASIS PortalFAM71E2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71E2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71E2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71E2
DgiDB (Drug Gene Interaction Database)FAM71E2
DoCM (Curated mutations)FAM71E2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71E2 (select a term)
intoGenFAM71E2
Cancer3DFAM71E2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71E2
Genetic Testing Registry FAM71E2
NextProtQ8N5Q1 [Medical]
TSGene284418
GENETestsFAM71E2
Huge Navigator FAM71E2 [HugePedia]
snp3D : Map Gene to Disease284418
BioCentury BCIQFAM71E2
ClinGenFAM71E2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284418
Chemical/Pharm GKB GenePA164719912
Clinical trialFAM71E2
Miscellaneous
canSAR (ICR)FAM71E2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71E2
EVEXFAM71E2
GoPubMedFAM71E2
iHOPFAM71E2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:11:33 CEST 2017

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