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FAM71F1 (family with sequence similarity 71 member F1)

Identity

Alias_namesFAM137A
family with sequence similarity 137, member A
family with sequence similarity 71, member F1
Alias_symbol (synonym)NYD-SP18
Other alias
HGNC (Hugo) FAM71F1
LocusID (NCBI) 84691
Atlas_Id 63233
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128715342 and ends at 128731743 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71F1   30704
Cards
Entrez_Gene (NCBI)FAM71F1  84691  family with sequence similarity 71 member F1
AliasesFAM137A; NYD-SP18
GeneCards (Weizmann)FAM71F1
Ensembl hg19 (Hinxton)ENSG00000135248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135248 [Gene_View]  chr7:128715342-128731743 [Contig_View]  FAM71F1 [Vega]
ICGC DataPortalENSG00000135248
TCGA cBioPortalFAM71F1
AceView (NCBI)FAM71F1
Genatlas (Paris)FAM71F1
WikiGenes84691
SOURCE (Princeton)FAM71F1
Genetics Home Reference (NIH)FAM71F1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM71F1  -     chr7:128715342-128731743 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM71F1  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblFAM71F1 - 7q32.1 [CytoView hg19]  FAM71F1 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIFAM71F1 [Mapview hg19]  FAM71F1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF367470 AK093161 AK302221 AK310308 AK310426
RefSeq transcript (Entrez)NM_001282788 NM_001282789 NM_032599
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM71F1
Cluster EST : UnigeneHs.732440 [ NCBI ]
CGAP (NCI)Hs.732440
Alternative Splicing GalleryENSG00000135248
Gene ExpressionFAM71F1 [ NCBI-GEO ]   FAM71F1 [ EBI - ARRAY_EXPRESS ]   FAM71F1 [ SEEK ]   FAM71F1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84691
GTEX Portal (Tissue expression)FAM71F1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KD3
Splice isoforms : SwissVarQ96KD3
PhosPhoSitePlusQ96KD3
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71F1
DMDM Disease mutations84691
Blocks (Seattle)FAM71F1
SuperfamilyQ96KD3
Human Protein AtlasENSG00000135248
Peptide AtlasQ96KD3
HPRD14861
IPIIPI00064565   IPI00877093   IPI00945416   IPI00945914   IPI00946071   IPI01025764   IPI00944911   
Protein Interaction databases
DIP (DOE-UCLA)Q96KD3
IntAct (EBI)Q96KD3
FunCoupENSG00000135248
BioGRIDFAM71F1
STRING (EMBL)FAM71F1
ZODIACFAM71F1
Ontologies - Pathways
QuickGOQ96KD3
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71F1
Atlas of Cancer Signalling NetworkFAM71F1
Wikipedia pathwaysFAM71F1
Orthology - Evolution
OrthoDB84691
GeneTree (enSembl)ENSG00000135248
Phylogenetic Trees/Animal Genes : TreeFamFAM71F1
HOVERGENQ96KD3
HOGENOMQ96KD3
Homologs : HomoloGeneFAM71F1
Homology/Alignments : Family Browser (UCSC)FAM71F1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71F1
dbVarFAM71F1
ClinVarFAM71F1
1000_GenomesFAM71F1 
Exome Variant ServerFAM71F1
ExAC (Exome Aggregation Consortium)FAM71F1 (select the gene name)
Genetic variants : HAPMAP84691
Genomic Variants (DGV)FAM71F1 [DGVbeta]
DECIPHERFAM71F1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM71F1 
Mutations
ICGC Data PortalFAM71F1 
TCGA Data PortalFAM71F1 
Broad Tumor PortalFAM71F1
OASIS PortalFAM71F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71F1
DgiDB (Drug Gene Interaction Database)FAM71F1
DoCM (Curated mutations)FAM71F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71F1 (select a term)
intoGenFAM71F1
Cancer3DFAM71F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71F1
Genetic Testing Registry FAM71F1
NextProtQ96KD3 [Medical]
TSGene84691
GENETestsFAM71F1
Target ValidationFAM71F1
Huge Navigator FAM71F1 [HugePedia]
snp3D : Map Gene to Disease84691
BioCentury BCIQFAM71F1
ClinGenFAM71F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84691
Chemical/Pharm GKB GenePA162387797
Clinical trialFAM71F1
Miscellaneous
canSAR (ICR)FAM71F1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71F1
EVEXFAM71F1
GoPubMedFAM71F1
iHOPFAM71F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:42 CEST 2017

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