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FAM71F2 (family with sequence similarity 71 member F2)

Identity

Alias_namesFAM137B
family with sequence similarity 137, member B
family with sequence similarity 71, member F2
Other alias
HGNC (Hugo) FAM71F2
LocusID (NCBI) 346653
Atlas_Id 63234
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128672266 and ends at 128687872 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71F2   27998
Cards
Entrez_Gene (NCBI)FAM71F2  346653  family with sequence similarity 71 member F2
AliasesFAM137B
GeneCards (Weizmann)FAM71F2
Ensembl hg19 (Hinxton)ENSG00000205085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205085 [Gene_View]  chr7:128672266-128687872 [Contig_View]  FAM71F2 [Vega]
ICGC DataPortalENSG00000205085
TCGA cBioPortalFAM71F2
AceView (NCBI)FAM71F2
Genatlas (Paris)FAM71F2
WikiGenes346653
SOURCE (Princeton)FAM71F2
Genetics Home Reference (NIH)FAM71F2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM71F2  -     chr7:128672266-128687872 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM71F2  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblFAM71F2 - 7q32.1 [CytoView hg19]  FAM71F2 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIFAM71F2 [Mapview hg19]  FAM71F2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047310 BC066973 BC105729 BC105730 BC105731
RefSeq transcript (Entrez)NM_001012454 NM_001128926 NM_001290254 NM_001290255
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM71F2
Cluster EST : UnigeneHs.445236 [ NCBI ]
CGAP (NCI)Hs.445236
Alternative Splicing GalleryENSG00000205085
Gene ExpressionFAM71F2 [ NCBI-GEO ]   FAM71F2 [ EBI - ARRAY_EXPRESS ]   FAM71F2 [ SEEK ]   FAM71F2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71F2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346653
GTEX Portal (Tissue expression)FAM71F2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXP2
Splice isoforms : SwissVarQ6NXP2
PhosPhoSitePlusQ6NXP2
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71F2
DMDM Disease mutations346653
Blocks (Seattle)FAM71F2
SuperfamilyQ6NXP2
Human Protein AtlasENSG00000205085
Peptide AtlasQ6NXP2
HPRD17840
IPIIPI00418222   IPI00872630   IPI00947033   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXP2
IntAct (EBI)Q6NXP2
FunCoupENSG00000205085
BioGRIDFAM71F2
STRING (EMBL)FAM71F2
ZODIACFAM71F2
Ontologies - Pathways
QuickGOQ6NXP2
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71F2
Atlas of Cancer Signalling NetworkFAM71F2
Wikipedia pathwaysFAM71F2
Orthology - Evolution
OrthoDB346653
GeneTree (enSembl)ENSG00000205085
Phylogenetic Trees/Animal Genes : TreeFamFAM71F2
HOVERGENQ6NXP2
HOGENOMQ6NXP2
Homologs : HomoloGeneFAM71F2
Homology/Alignments : Family Browser (UCSC)FAM71F2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71F2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71F2
dbVarFAM71F2
ClinVarFAM71F2
1000_GenomesFAM71F2 
Exome Variant ServerFAM71F2
ExAC (Exome Aggregation Consortium)FAM71F2 (select the gene name)
Genetic variants : HAPMAP346653
Genomic Variants (DGV)FAM71F2 [DGVbeta]
DECIPHERFAM71F2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM71F2 
Mutations
ICGC Data PortalFAM71F2 
TCGA Data PortalFAM71F2 
Broad Tumor PortalFAM71F2
OASIS PortalFAM71F2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71F2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71F2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71F2
DgiDB (Drug Gene Interaction Database)FAM71F2
DoCM (Curated mutations)FAM71F2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71F2 (select a term)
intoGenFAM71F2
Cancer3DFAM71F2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71F2
Genetic Testing Registry FAM71F2
NextProtQ6NXP2 [Medical]
TSGene346653
GENETestsFAM71F2
Target ValidationFAM71F2
Huge Navigator FAM71F2 [HugePedia]
snp3D : Map Gene to Disease346653
BioCentury BCIQFAM71F2
ClinGenFAM71F2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346653
Chemical/Pharm GKB GenePA162387816
Clinical trialFAM71F2
Miscellaneous
canSAR (ICR)FAM71F2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71F2
EVEXFAM71F2
GoPubMedFAM71F2
iHOPFAM71F2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:42 CEST 2017

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