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FAM72A (family with sequence similarity 72 member A)

Identity

Alias_namesfamily with sequence similarity 72
Alias_symbol (synonym)MGC57827
RP11-312O7.1
Other aliasLMPIP
Ugene
p17
HGNC (Hugo) FAM72A
LocusID (NCBI) 729533
Atlas_Id 51110
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 206186179 and ends at 206204065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPL15 (8q11.23) / FAM72A (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM72A   24044
Cards
Entrez_Gene (NCBI)FAM72A  729533  family with sequence similarity 72 member A
AliasesLMPIP; Ugene; p17
GeneCards (Weizmann)FAM72A
Ensembl hg19 (Hinxton)ENSG00000196550 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196550 [Gene_View]  ENSG00000196550 [Sequence]  chr1:206186179-206204065 [Contig_View]  FAM72A [Vega]
ICGC DataPortalENSG00000196550
TCGA cBioPortalFAM72A
AceView (NCBI)FAM72A
Genatlas (Paris)FAM72A
WikiGenes729533
SOURCE (Princeton)FAM72A
Genetics Home Reference (NIH)FAM72A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM72A  -     chr1:206186179-206204065 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM72A  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblFAM72A - 1q32.1 [CytoView hg19]  FAM72A - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIFAM72A [Mapview hg19]  FAM72A [Mapview hg38]
OMIM614710   
Gene and transcription
Genbank (Entrez)AA829651 AW403341 BC035696 BC137545 BC146978
RefSeq transcript (Entrez)NM_001123168 NM_001317901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM72A
Cluster EST : UnigeneHs.661924 [ NCBI ]
CGAP (NCI)Hs.661924
Alternative Splicing GalleryENSG00000196550
Gene ExpressionFAM72A [ NCBI-GEO ]   FAM72A [ EBI - ARRAY_EXPRESS ]   FAM72A [ SEEK ]   FAM72A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM72A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729533
GTEX Portal (Tissue expression)FAM72A
Human Protein AtlasENSG00000196550-FAM72A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TYM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TYM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TYM5
Splice isoforms : SwissVarQ5TYM5
PhosPhoSitePlusQ5TYM5
Domains : Interpro (EBI)FAM72   
Domain families : Pfam (Sanger)FAM72 (PF14976)   
Domain families : Pfam (NCBI)pfam14976   
Conserved Domain (NCBI)FAM72A
DMDM Disease mutations729533
Blocks (Seattle)FAM72A
SuperfamilyQ5TYM5
Human Protein Atlas [tissue]ENSG00000196550-FAM72A [tissue]
Peptide AtlasQ5TYM5
IPIIPI00647785   IPI00329150   IPI00478451   
Protein Interaction databases
DIP (DOE-UCLA)Q5TYM5
IntAct (EBI)Q5TYM5
FunCoupENSG00000196550
BioGRIDFAM72A
STRING (EMBL)FAM72A
ZODIACFAM72A
Ontologies - Pathways
QuickGOQ5TYM5
Ontology : AmiGOprotein binding  mitochondrion  cytosol  cytosol  membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  mitochondrion  cytosol  cytosol  membrane  intracellular membrane-bounded organelle  
NDEx NetworkFAM72A
Atlas of Cancer Signalling NetworkFAM72A
Wikipedia pathwaysFAM72A
Orthology - Evolution
OrthoDB729533
GeneTree (enSembl)ENSG00000196550
Phylogenetic Trees/Animal Genes : TreeFamFAM72A
HOVERGENQ5TYM5
HOGENOMQ5TYM5
Homologs : HomoloGeneFAM72A
Homology/Alignments : Family Browser (UCSC)FAM72A
Gene fusions - Rearrangements
Fusion : QuiverFAM72A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM72A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM72A
dbVarFAM72A
ClinVarFAM72A
1000_GenomesFAM72A 
Exome Variant ServerFAM72A
ExAC (Exome Aggregation Consortium)ENSG00000196550
GNOMAD BrowserENSG00000196550
Varsome BrowserFAM72A
Genetic variants : HAPMAP729533
Genomic Variants (DGV)FAM72A [DGVbeta]
DECIPHERFAM72A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM72A 
Mutations
ICGC Data PortalFAM72A 
TCGA Data PortalFAM72A 
Broad Tumor PortalFAM72A
OASIS PortalFAM72A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM72A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM72A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM72A
DgiDB (Drug Gene Interaction Database)FAM72A
DoCM (Curated mutations)FAM72A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM72A (select a term)
intoGenFAM72A
Cancer3DFAM72A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614710   
Orphanet
DisGeNETFAM72A
MedgenFAM72A
Genetic Testing Registry FAM72A
NextProtQ5TYM5 [Medical]
TSGene729533
GENETestsFAM72A
Target ValidationFAM72A
Huge Navigator FAM72A [HugePedia]
snp3D : Map Gene to Disease729533
BioCentury BCIQFAM72A
ClinGenFAM72A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729533
Chemical/Pharm GKB GenePA142671833
Clinical trialFAM72A
Miscellaneous
canSAR (ICR)FAM72A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM72A
EVEXFAM72A
GoPubMedFAM72A
iHOPFAM72A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:05:45 CET 2018
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