Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM72B (family with sequence similarity 72 member B)

Identity

Alias_namesfamily with sequence similarity 72
Alias_symbol (synonym)RP11-439A17.6
Other aliasp17
HGNC (Hugo) FAM72B
LocusID (NCBI) 653820
Atlas_Id 55914
Location 1p11.2  [Link to chromosome band 1p11]
Location_base_pair Starts at 121167646 and ends at 121183911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM72B   24805
Cards
Entrez_Gene (NCBI)FAM72B  653820  family with sequence similarity 72 member B
Aliasesp17
GeneCards (Weizmann)FAM72B
Ensembl hg19 (Hinxton)ENSG00000188610 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188610 [Gene_View]  ENSG00000188610 [Sequence]  chr1:121167646-121183911 [Contig_View]  FAM72B [Vega]
ICGC DataPortalENSG00000188610
TCGA cBioPortalFAM72B
AceView (NCBI)FAM72B
Genatlas (Paris)FAM72B
WikiGenes653820
SOURCE (Princeton)FAM72B
Genetics Home Reference (NIH)FAM72B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM72B  -     chr1:121167646-121183911 -  1p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM72B  -     1p11.2   [Description]    (hg19-Feb_2009)
GoldenPathFAM72B - 1p11.2 [CytoView hg19]  FAM72B - 1p11.2 [CytoView hg38]
ImmunoBaseENSG00000188610
Mapping of homologs : NCBIFAM72B [Mapview hg19]  FAM72B [Mapview hg38]
OMIM614711   
Gene and transcription
Genbank (Entrez)BC046199 BC137546 BQ022098
RefSeq transcript (Entrez)NM_001100910 NM_001320149
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM72B
Cluster EST : UnigeneHs.339665 [ NCBI ]
CGAP (NCI)Hs.339665
Alternative Splicing GalleryENSG00000188610
Gene ExpressionFAM72B [ NCBI-GEO ]   FAM72B [ EBI - ARRAY_EXPRESS ]   FAM72B [ SEEK ]   FAM72B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM72B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653820
GTEX Portal (Tissue expression)FAM72B
Human Protein AtlasENSG00000188610-FAM72B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X60
Splice isoforms : SwissVarQ86X60
PhosPhoSitePlusQ86X60
Domains : Interpro (EBI)FAM72   
Domain families : Pfam (Sanger)FAM72 (PF14976)   
Domain families : Pfam (NCBI)pfam14976   
Conserved Domain (NCBI)FAM72B
DMDM Disease mutations653820
Blocks (Seattle)FAM72B
SuperfamilyQ86X60
Human Protein Atlas [tissue]ENSG00000188610-FAM72B [tissue]
Peptide AtlasQ86X60
IPIIPI00641243   IPI00640746   IPI00936170   IPI00645546   
Protein Interaction databases
DIP (DOE-UCLA)Q86X60
IntAct (EBI)Q86X60
FunCoupENSG00000188610
BioGRIDFAM72B
STRING (EMBL)FAM72B
ZODIACFAM72B
Ontologies - Pathways
QuickGOQ86X60
Ontology : AmiGOcytosol  cytosol  membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcytosol  cytosol  membrane  intracellular membrane-bounded organelle  
NDEx NetworkFAM72B
Atlas of Cancer Signalling NetworkFAM72B
Wikipedia pathwaysFAM72B
Orthology - Evolution
OrthoDB653820
GeneTree (enSembl)ENSG00000188610
Phylogenetic Trees/Animal Genes : TreeFamFAM72B
HOGENOMQ86X60
Homologs : HomoloGeneFAM72B
Homology/Alignments : Family Browser (UCSC)FAM72B
Gene fusions - Rearrangements
Fusion : QuiverFAM72B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM72B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM72B
dbVarFAM72B
ClinVarFAM72B
1000_GenomesFAM72B 
Exome Variant ServerFAM72B
ExAC (Exome Aggregation Consortium)ENSG00000188610
GNOMAD BrowserENSG00000188610
Varsome BrowserFAM72B
Genetic variants : HAPMAP653820
Genomic Variants (DGV)FAM72B [DGVbeta]
DECIPHERFAM72B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM72B 
Mutations
ICGC Data PortalFAM72B 
TCGA Data PortalFAM72B 
Broad Tumor PortalFAM72B
OASIS PortalFAM72B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM72B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM72B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM72B
DgiDB (Drug Gene Interaction Database)FAM72B
DoCM (Curated mutations)FAM72B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM72B (select a term)
intoGenFAM72B
Cancer3DFAM72B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614711   
Orphanet
DisGeNETFAM72B
MedgenFAM72B
Genetic Testing Registry FAM72B
NextProtQ86X60 [Medical]
TSGene653820
GENETestsFAM72B
Target ValidationFAM72B
Huge Navigator FAM72B [HugePedia]
snp3D : Map Gene to Disease653820
BioCentury BCIQFAM72B
ClinGenFAM72B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653820
Chemical/Pharm GKB GenePA142671834
Clinical trialFAM72B
Miscellaneous
canSAR (ICR)FAM72B (select the gene name)
DataMed IndexFAM72B
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM72B
EVEXFAM72B
GoPubMedFAM72B
iHOPFAM72B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 8 11:19:45 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.