Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM72C (family with sequence similarity 72 member C)

Identity

Alias_namesfamily with sequence similarity 72
Alias_symbol (synonym)RP5-998N21.9
Other alias-
HGNC (Hugo) FAM72C
LocusID (NCBI) 554282
Atlas_Id 55898
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 143955364 and ends at 143972006 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM72C   30602
Cards
Entrez_Gene (NCBI)FAM72C  554282  family with sequence similarity 72 member C
Aliases
GeneCards (Weizmann)FAM72C
Ensembl hg19 (Hinxton)ENSG00000263513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263513 [Gene_View]  chr1:143955364-143972006 [Contig_View]  FAM72C [Vega]
ICGC DataPortalENSG00000263513
TCGA cBioPortalFAM72C
AceView (NCBI)FAM72C
Genatlas (Paris)FAM72C
WikiGenes554282
SOURCE (Princeton)FAM72C
Genetics Home Reference (NIH)FAM72C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM72C  -     chr1:143955364-143972006 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM72C  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblFAM72C - 1q21.1 [CytoView hg19]  FAM72C - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM72C [Mapview hg19]  FAM72C [Mapview hg38]
OMIM616853   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001287385 NM_001346067 NM_001346068 NM_001346070 NM_001346071
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM72C
Alternative Splicing GalleryENSG00000263513
Gene ExpressionFAM72C [ NCBI-GEO ]   FAM72C [ EBI - ARRAY_EXPRESS ]   FAM72C [ SEEK ]   FAM72C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM72C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554282
GTEX Portal (Tissue expression)FAM72C
Protein : pattern, domain, 3D structure
UniProt/SwissProtH0Y354   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH0Y354  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH0Y354
Splice isoforms : SwissVarH0Y354
PhosPhoSitePlusH0Y354
Domains : Interpro (EBI)FAM72   
Domain families : Pfam (Sanger)FAM72 (PF14976)   
Domain families : Pfam (NCBI)pfam14976   
Conserved Domain (NCBI)FAM72C
DMDM Disease mutations554282
Blocks (Seattle)FAM72C
SuperfamilyH0Y354
Human Protein AtlasENSG00000263513
Peptide AtlasH0Y354
IPIIPI00642924   
Protein Interaction databases
DIP (DOE-UCLA)H0Y354
IntAct (EBI)H0Y354
FunCoupENSG00000263513
BioGRIDFAM72C
STRING (EMBL)FAM72C
ZODIACFAM72C
Ontologies - Pathways
QuickGOH0Y354
Ontology : AmiGOcytosol  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcytosol  intracellular membrane-bounded organelle  
NDEx NetworkFAM72C
Atlas of Cancer Signalling NetworkFAM72C
Wikipedia pathwaysFAM72C
Orthology - Evolution
OrthoDB554282
GeneTree (enSembl)ENSG00000263513
Phylogenetic Trees/Animal Genes : TreeFamFAM72C
HOVERGENH0Y354
HOGENOMH0Y354
Homologs : HomoloGeneFAM72C
Homology/Alignments : Family Browser (UCSC)FAM72C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM72C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM72C
dbVarFAM72C
ClinVarFAM72C
1000_GenomesFAM72C 
Exome Variant ServerFAM72C
ExAC (Exome Aggregation Consortium)FAM72C (select the gene name)
Genetic variants : HAPMAP554282
Genomic Variants (DGV)FAM72C [DGVbeta]
DECIPHERFAM72C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM72C 
Mutations
ICGC Data PortalFAM72C 
TCGA Data PortalFAM72C 
Broad Tumor PortalFAM72C
OASIS PortalFAM72C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM72C
BioMutasearch FAM72C
DgiDB (Drug Gene Interaction Database)FAM72C
DoCM (Curated mutations)FAM72C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM72C (select a term)
intoGenFAM72C
Cancer3DFAM72C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616853   
Orphanet
MedgenFAM72C
Genetic Testing Registry FAM72C
NextProtH0Y354 [Medical]
TSGene554282
GENETestsFAM72C
Target ValidationFAM72C
Huge Navigator FAM72C [HugePedia]
snp3D : Map Gene to Disease554282
BioCentury BCIQFAM72C
ClinGenFAM72C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554282
Chemical/Pharm GKB GenePA142671835
Clinical trialFAM72C
Miscellaneous
canSAR (ICR)FAM72C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM72C
EVEXFAM72C
GoPubMedFAM72C
iHOPFAM72C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:33:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.