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FAM72D (family with sequence similarity 72 member D)

Identity

Alias_namesfamily with sequence similarity 72
Other aliasGCUD2
HGNC (Hugo) FAM72D
LocusID (NCBI) 728833
Atlas_Id 55899
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 143896452 and ends at 143913143 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM72D   33593
Cards
Entrez_Gene (NCBI)FAM72D  728833  family with sequence similarity 72 member D
AliasesGCUD2
GeneCards (Weizmann)FAM72D
Ensembl hg19 (Hinxton)ENSG00000215784 [Gene_View]  chr1:143896452-143913143 [Contig_View]  FAM72D [Vega]
Ensembl hg38 (Hinxton)ENSG00000215784 [Gene_View]  chr1:143896452-143913143 [Contig_View]  FAM72D [Vega]
ICGC DataPortalENSG00000215784
TCGA cBioPortalFAM72D
AceView (NCBI)FAM72D
Genatlas (Paris)FAM72D
WikiGenes728833
SOURCE (Princeton)FAM72D
Genetics Home Reference (NIH)FAM72D
Genomic and cartography
GoldenPath hg19 (UCSC)FAM72D  -     chr1:143896452-143913143 -  1q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM72D  -     1q21.1   [Description]    (hg38-Dec_2013)
EnsemblFAM72D - 1q21.1 [CytoView hg19]  FAM72D - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM72D [Mapview hg19]  FAM72D [Mapview hg38]
OMIM614712   
Gene and transcription
Genbank (Entrez)AB096683 AK307197
RefSeq transcript (Entrez)NM_207418
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM72D
Cluster EST : UnigeneHs.535577 [ NCBI ]
CGAP (NCI)Hs.535577
Alternative Splicing GalleryENSG00000215784
Gene ExpressionFAM72D [ NCBI-GEO ]   FAM72D [ EBI - ARRAY_EXPRESS ]   FAM72D [ SEEK ]   FAM72D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM72D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728833
GTEX Portal (Tissue expression)FAM72D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L9T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L9T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L9T8
Splice isoforms : SwissVarQ6L9T8
PhosPhoSitePlusQ6L9T8
Domains : Interpro (EBI)FAM72   
Domain families : Pfam (Sanger)FAM72 (PF14976)   
Domain families : Pfam (NCBI)pfam14976   
Conserved Domain (NCBI)FAM72D
DMDM Disease mutations728833
Blocks (Seattle)FAM72D
SuperfamilyQ6L9T8
Human Protein AtlasENSG00000215784
Peptide AtlasQ6L9T8
IPIIPI00786941   IPI00943189   
Protein Interaction databases
DIP (DOE-UCLA)Q6L9T8
IntAct (EBI)Q6L9T8
FunCoupENSG00000215784
BioGRIDFAM72D
STRING (EMBL)FAM72D
ZODIACFAM72D
Ontologies - Pathways
QuickGOQ6L9T8
Ontology : AmiGOcytoplasm  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcytoplasm  intracellular membrane-bounded organelle  
NDEx NetworkFAM72D
Atlas of Cancer Signalling NetworkFAM72D
Wikipedia pathwaysFAM72D
Orthology - Evolution
OrthoDB728833
GeneTree (enSembl)ENSG00000215784
Phylogenetic Trees/Animal Genes : TreeFamFAM72D
HOVERGENQ6L9T8
HOGENOMQ6L9T8
Homologs : HomoloGeneFAM72D
Homology/Alignments : Family Browser (UCSC)FAM72D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM72D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM72D
dbVarFAM72D
ClinVarFAM72D
1000_GenomesFAM72D 
Exome Variant ServerFAM72D
ExAC (Exome Aggregation Consortium)FAM72D (select the gene name)
Genetic variants : HAPMAP728833
Genomic Variants (DGV)FAM72D [DGVbeta]
DECIPHER (Syndromes)1:143896452-143913143  ENSG00000215784
CONAN: Copy Number AnalysisFAM72D 
Mutations
ICGC Data PortalFAM72D 
TCGA Data PortalFAM72D 
Broad Tumor PortalFAM72D
OASIS PortalFAM72D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM72D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM72D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM72D
DgiDB (Drug Gene Interaction Database)FAM72D
DoCM (Curated mutations)FAM72D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM72D (select a term)
intoGenFAM72D
Cancer3DFAM72D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614712   
Orphanet
MedgenFAM72D
Genetic Testing Registry FAM72D
NextProtQ6L9T8 [Medical]
TSGene728833
GENETestsFAM72D
Huge Navigator FAM72D [HugePedia]
snp3D : Map Gene to Disease728833
BioCentury BCIQFAM72D
ClinGenFAM72D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728833
Chemical/Pharm GKB GenePA162387831
Clinical trialFAM72D
Miscellaneous
canSAR (ICR)FAM72D (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM72D
EVEXFAM72D
GoPubMedFAM72D
iHOPFAM72D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:47 CEST 2017

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