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FAM73A (family with sequence similarity 73, member A)

Identity

Other alias-
HGNC (Hugo) FAM73A
LocusID (NCBI) 374986
Atlas_Id 63238
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78245309 and ends at 78345225 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM73A (1p31.1) / BOLA2 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM73A   24741
Cards
Entrez_Gene (NCBI)FAM73A  374986  family with sequence similarity 73, member A
Aliases
GeneCards (Weizmann)FAM73A
Ensembl hg19 (Hinxton)ENSG00000180488 [Gene_View]  chr1:78245309-78345225 [Contig_View]  FAM73A [Vega]
Ensembl hg38 (Hinxton)ENSG00000180488 [Gene_View]  chr1:78245309-78345225 [Contig_View]  FAM73A [Vega]
ICGC DataPortalENSG00000180488
TCGA cBioPortalFAM73A
AceView (NCBI)FAM73A
Genatlas (Paris)FAM73A
WikiGenes374986
SOURCE (Princeton)FAM73A
Genetics Home Reference (NIH)FAM73A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM73A  -     chr1:78245309-78345225 +  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM73A  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblFAM73A - 1p31.1 [CytoView hg19]  FAM73A - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIFAM73A [Mapview hg19]  FAM73A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092412 AK296411 BC130387 BC144167 BX537792
RefSeq transcript (Entrez)NM_001270384 NM_198549
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)FAM73A
Cluster EST : UnigeneHs.437755 [ NCBI ]
CGAP (NCI)Hs.437755
Alternative Splicing GalleryENSG00000180488
Gene ExpressionFAM73A [ NCBI-GEO ]   FAM73A [ EBI - ARRAY_EXPRESS ]   FAM73A [ SEEK ]   FAM73A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM73A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374986
GTEX Portal (Tissue expression)FAM73A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAN2
Splice isoforms : SwissVarQ8NAN2
PhosPhoSitePlusQ8NAN2
Domains : Interpro (EBI)DUF2217   
Domain families : Pfam (Sanger)DUF2217 (PF10265)   
Domain families : Pfam (NCBI)pfam10265   
Conserved Domain (NCBI)FAM73A
DMDM Disease mutations374986
Blocks (Seattle)FAM73A
SuperfamilyQ8NAN2
Human Protein AtlasENSG00000180488
Peptide AtlasQ8NAN2
HPRD13415
IPIIPI00845421   IPI00168047   IPI01015082   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAN2
IntAct (EBI)Q8NAN2
FunCoupENSG00000180488
BioGRIDFAM73A
STRING (EMBL)FAM73A
ZODIACFAM73A
Ontologies - Pathways
QuickGOQ8NAN2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM73A
Atlas of Cancer Signalling NetworkFAM73A
Wikipedia pathwaysFAM73A
Orthology - Evolution
OrthoDB374986
GeneTree (enSembl)ENSG00000180488
Phylogenetic Trees/Animal Genes : TreeFamFAM73A
HOVERGENQ8NAN2
HOGENOMQ8NAN2
Homologs : HomoloGeneFAM73A
Homology/Alignments : Family Browser (UCSC)FAM73A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM73A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM73A
dbVarFAM73A
ClinVarFAM73A
1000_GenomesFAM73A 
Exome Variant ServerFAM73A
ExAC (Exome Aggregation Consortium)FAM73A (select the gene name)
Genetic variants : HAPMAP374986
Genomic Variants (DGV)FAM73A [DGVbeta]
DECIPHER (Syndromes)1:78245309-78345225  ENSG00000180488
CONAN: Copy Number AnalysisFAM73A 
Mutations
ICGC Data PortalFAM73A 
TCGA Data PortalFAM73A 
Broad Tumor PortalFAM73A
OASIS PortalFAM73A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM73A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM73A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM73A
DgiDB (Drug Gene Interaction Database)FAM73A
DoCM (Curated mutations)FAM73A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM73A (select a term)
intoGenFAM73A
Cancer3DFAM73A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM73A
Genetic Testing Registry FAM73A
NextProtQ8NAN2 [Medical]
TSGene374986
GENETestsFAM73A
Huge Navigator FAM73A [HugePedia]
snp3D : Map Gene to Disease374986
BioCentury BCIQFAM73A
ClinGenFAM73A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374986
Chemical/Pharm GKB GenePA142671836
Clinical trialFAM73A
Miscellaneous
canSAR (ICR)FAM73A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM73A
EVEXFAM73A
GoPubMedFAM73A
iHOPFAM73A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:18 CET 2017

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