Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM73B (family with sequence similarity 73, member B)

Identity

Other aliasC9orf54
HGNC (Hugo) FAM73B
LocusID (NCBI) 84895
Atlas_Id 63239
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 131799253 and ends at 131834351 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM73B (9q34.11) / NUP188 (9q34.11)PPP2R4 (9q34.11) / FAM73B (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM73B   23621
Cards
Entrez_Gene (NCBI)FAM73B  84895  family with sequence similarity 73, member B
AliasesC9orf54
GeneCards (Weizmann)FAM73B
Ensembl hg19 (Hinxton)ENSG00000148343 [Gene_View]  chr9:131799253-131834351 [Contig_View]  FAM73B [Vega]
Ensembl hg38 (Hinxton)ENSG00000148343 [Gene_View]  chr9:131799253-131834351 [Contig_View]  FAM73B [Vega]
ICGC DataPortalENSG00000148343
TCGA cBioPortalFAM73B
AceView (NCBI)FAM73B
Genatlas (Paris)FAM73B
WikiGenes84895
SOURCE (Princeton)FAM73B
Genetics Home Reference (NIH)FAM73B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM73B  -     chr9:131799253-131834351 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM73B  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblFAM73B - 9q34.11 [CytoView hg19]  FAM73B - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIFAM73B [Mapview hg19]  FAM73B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ420465 AK027502 AK054974 AK074127 AK075421
RefSeq transcript (Entrez)NM_032809
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)FAM73B
Cluster EST : UnigeneHs.632693 [ NCBI ]
CGAP (NCI)Hs.632693
Alternative Splicing GalleryENSG00000148343
Gene ExpressionFAM73B [ NCBI-GEO ]   FAM73B [ EBI - ARRAY_EXPRESS ]   FAM73B [ SEEK ]   FAM73B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM73B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84895
GTEX Portal (Tissue expression)FAM73B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L4E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L4E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L4E1
Splice isoforms : SwissVarQ7L4E1
PhosPhoSitePlusQ7L4E1
Domains : Interpro (EBI)DUF2217   
Domain families : Pfam (Sanger)DUF2217 (PF10265)   
Domain families : Pfam (NCBI)pfam10265   
Conserved Domain (NCBI)FAM73B
DMDM Disease mutations84895
Blocks (Seattle)FAM73B
SuperfamilyQ7L4E1
Human Protein AtlasENSG00000148343
Peptide AtlasQ7L4E1
HPRD12965
IPIIPI00926724   IPI00878608   IPI00646782   IPI00909206   IPI00877877   IPI00382514   IPI00745069   IPI00844024   IPI00893510   
Protein Interaction databases
DIP (DOE-UCLA)Q7L4E1
IntAct (EBI)Q7L4E1
FunCoupENSG00000148343
BioGRIDFAM73B
STRING (EMBL)FAM73B
ZODIACFAM73B
Ontologies - Pathways
QuickGOQ7L4E1
Ontology : AmiGOintegral component of membrane  bone development  
Ontology : EGO-EBIintegral component of membrane  bone development  
NDEx NetworkFAM73B
Atlas of Cancer Signalling NetworkFAM73B
Wikipedia pathwaysFAM73B
Orthology - Evolution
OrthoDB84895
GeneTree (enSembl)ENSG00000148343
Phylogenetic Trees/Animal Genes : TreeFamFAM73B
HOVERGENQ7L4E1
HOGENOMQ7L4E1
Homologs : HomoloGeneFAM73B
Homology/Alignments : Family Browser (UCSC)FAM73B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM73B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM73B
dbVarFAM73B
ClinVarFAM73B
1000_GenomesFAM73B 
Exome Variant ServerFAM73B
ExAC (Exome Aggregation Consortium)FAM73B (select the gene name)
Genetic variants : HAPMAP84895
Genomic Variants (DGV)FAM73B [DGVbeta]
DECIPHER (Syndromes)9:131799253-131834351  ENSG00000148343
CONAN: Copy Number AnalysisFAM73B 
Mutations
ICGC Data PortalFAM73B 
TCGA Data PortalFAM73B 
Broad Tumor PortalFAM73B
OASIS PortalFAM73B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM73B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM73B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM73B
DgiDB (Drug Gene Interaction Database)FAM73B
DoCM (Curated mutations)FAM73B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM73B (select a term)
intoGenFAM73B
Cancer3DFAM73B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM73B
Genetic Testing Registry FAM73B
NextProtQ7L4E1 [Medical]
TSGene84895
GENETestsFAM73B
Huge Navigator FAM73B [HugePedia]
snp3D : Map Gene to Disease84895
BioCentury BCIQFAM73B
ClinGenFAM73B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84895
Chemical/Pharm GKB GenePA134896424
Clinical trialFAM73B
Miscellaneous
canSAR (ICR)FAM73B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM73B
EVEXFAM73B
GoPubMedFAM73B
iHOPFAM73B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:19 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.