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FAM74A1 (family with sequence similarity 74 member A1)

Identity

Alias_namesFAM74A5
family with sequence similarity 74, member A5
family with sequence similarity 74, member A1
Other alias
HGNC (Hugo) FAM74A1
LocusID (NCBI) 401507
Atlas_Id 63240
Location 9q12  [Link to chromosome band 9q12]
Location_base_pair Starts at 61205406 and ends at 61211350 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM74A1   32029
Cards
Entrez_Gene (NCBI)FAM74A1  401507  family with sequence similarity 74 member A1
AliasesFAM74A5
GeneCards (Weizmann)FAM74A1
Ensembl hg19 (Hinxton)ENSG00000215112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215112 [Gene_View]  chr9:61205406-61211350 [Contig_View]  FAM74A1 [Vega]
ICGC DataPortalENSG00000215112
TCGA cBioPortalFAM74A1
AceView (NCBI)FAM74A1
Genatlas (Paris)FAM74A1
WikiGenes401507
SOURCE (Princeton)FAM74A1
Genetics Home Reference (NIH)FAM74A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM74A1  -     chr9:61205406-61211350 +  9q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM74A1  -     9q12   [Description]    (hg19-Feb_2009)
EnsemblFAM74A1 - 9q12 [CytoView hg19]  FAM74A1 - 9q12 [CytoView hg38]
Mapping of homologs : NCBIFAM74A1 [Mapview hg19]  FAM74A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC118602
RefSeq transcript (Entrez)NM_001012278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM74A1
Cluster EST : UnigeneHs.553802 [ NCBI ]
CGAP (NCI)Hs.553802
Alternative Splicing GalleryENSG00000215112
Gene ExpressionFAM74A1 [ NCBI-GEO ]   FAM74A1 [ EBI - ARRAY_EXPRESS ]   FAM74A1 [ SEEK ]   FAM74A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM74A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401507
GTEX Portal (Tissue expression)FAM74A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5RGS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5RGS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5RGS3
Splice isoforms : SwissVarQ5RGS3
PhosPhoSitePlusQ5RGS3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM74A1
DMDM Disease mutations401507
Blocks (Seattle)FAM74A1
SuperfamilyQ5RGS3
Human Protein AtlasENSG00000215112
Peptide AtlasQ5RGS3
HPRD17394
Protein Interaction databases
DIP (DOE-UCLA)Q5RGS3
IntAct (EBI)Q5RGS3
FunCoupENSG00000215112
BioGRIDFAM74A1
STRING (EMBL)FAM74A1
ZODIACFAM74A1
Ontologies - Pathways
QuickGOQ5RGS3
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkFAM74A1
Atlas of Cancer Signalling NetworkFAM74A1
Wikipedia pathwaysFAM74A1
Orthology - Evolution
OrthoDB401507
GeneTree (enSembl)ENSG00000215112
Phylogenetic Trees/Animal Genes : TreeFamFAM74A1
HOVERGENQ5RGS3
HOGENOMQ5RGS3
Homologs : HomoloGeneFAM74A1
Homology/Alignments : Family Browser (UCSC)FAM74A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM74A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM74A1
dbVarFAM74A1
ClinVarFAM74A1
1000_GenomesFAM74A1 
Exome Variant ServerFAM74A1
ExAC (Exome Aggregation Consortium)FAM74A1 (select the gene name)
Genetic variants : HAPMAP401507
Genomic Variants (DGV)FAM74A1 [DGVbeta]
DECIPHERFAM74A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM74A1 
Mutations
ICGC Data PortalFAM74A1 
TCGA Data PortalFAM74A1 
Broad Tumor PortalFAM74A1
OASIS PortalFAM74A1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM74A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM74A1
DgiDB (Drug Gene Interaction Database)FAM74A1
DoCM (Curated mutations)FAM74A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM74A1 (select a term)
intoGenFAM74A1
Cancer3DFAM74A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM74A1
Genetic Testing Registry FAM74A1
NextProtQ5RGS3 [Medical]
TSGene401507
GENETestsFAM74A1
Target ValidationFAM74A1
Huge Navigator FAM74A1 [HugePedia]
snp3D : Map Gene to Disease401507
BioCentury BCIQFAM74A1
ClinGenFAM74A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401507
Chemical/Pharm GKB GenePA145148906
Clinical trialFAM74A1
Miscellaneous
canSAR (ICR)FAM74A1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM74A1
EVEXFAM74A1
GoPubMedFAM74A1
iHOPFAM74A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:11 CEST 2017

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