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FAM76A (family with sequence similarity 76 member A)

Identity

Alias_namesfamily with sequence similarity 76, member A
Alias_symbol (synonym)MGC34648
Other alias-
HGNC (Hugo) FAM76A
LocusID (NCBI) 199870
Atlas_Id 63243
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 27725979 and ends at 27762912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMBL (5p15.2) / FAM76A (1p35.3)FAM76A (1p35.3) / WDTC1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM76A   28530
Cards
Entrez_Gene (NCBI)FAM76A  199870  family with sequence similarity 76 member A
Aliases
GeneCards (Weizmann)FAM76A
Ensembl hg19 (Hinxton)ENSG00000009780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000009780 [Gene_View]  chr1:27725979-27762912 [Contig_View]  FAM76A [Vega]
ICGC DataPortalENSG00000009780
TCGA cBioPortalFAM76A
AceView (NCBI)FAM76A
Genatlas (Paris)FAM76A
WikiGenes199870
SOURCE (Princeton)FAM76A
Genetics Home Reference (NIH)FAM76A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM76A  -     chr1:27725979-27762912 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM76A  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblFAM76A - 1p35.3 [CytoView hg19]  FAM76A - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBIFAM76A [Mapview hg19]  FAM76A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098318 AK123940 AK290120 AK301672 AK310165
RefSeq transcript (Entrez)NM_001143912 NM_001143913 NM_001143914 NM_001143915 NM_152660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM76A
Cluster EST : UnigeneHs.469359 [ NCBI ]
CGAP (NCI)Hs.469359
Alternative Splicing GalleryENSG00000009780
Gene ExpressionFAM76A [ NCBI-GEO ]   FAM76A [ EBI - ARRAY_EXPRESS ]   FAM76A [ SEEK ]   FAM76A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM76A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199870
GTEX Portal (Tissue expression)FAM76A
Human Protein AtlasENSG00000009780-FAM76A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAV0
Splice isoforms : SwissVarQ8TAV0
PhosPhoSitePlusQ8TAV0
Domains : Interpro (EBI)FAM76    FAM76A   
Domain families : Pfam (Sanger)FAM76 (PF16046)   
Domain families : Pfam (NCBI)pfam16046   
Conserved Domain (NCBI)FAM76A
DMDM Disease mutations199870
Blocks (Seattle)FAM76A
SuperfamilyQ8TAV0
Human Protein Atlas [tissue]ENSG00000009780-FAM76A [tissue]
Peptide AtlasQ8TAV0
HPRD14583
IPIIPI00178377   IPI00640824   IPI00020559   IPI00011374   IPI00515129   IPI00910384   IPI00976697   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAV0
IntAct (EBI)Q8TAV0
FunCoupENSG00000009780
BioGRIDFAM76A
STRING (EMBL)FAM76A
ZODIACFAM76A
Ontologies - Pathways
QuickGOQ8TAV0
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkFAM76A
Atlas of Cancer Signalling NetworkFAM76A
Wikipedia pathwaysFAM76A
Orthology - Evolution
OrthoDB199870
GeneTree (enSembl)ENSG00000009780
Phylogenetic Trees/Animal Genes : TreeFamFAM76A
HOVERGENQ8TAV0
HOGENOMQ8TAV0
Homologs : HomoloGeneFAM76A
Homology/Alignments : Family Browser (UCSC)FAM76A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM76A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM76A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM76A
dbVarFAM76A
ClinVarFAM76A
1000_GenomesFAM76A 
Exome Variant ServerFAM76A
ExAC (Exome Aggregation Consortium)ENSG00000009780
GNOMAD BrowserENSG00000009780
Genetic variants : HAPMAP199870
Genomic Variants (DGV)FAM76A [DGVbeta]
DECIPHERFAM76A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM76A 
Mutations
ICGC Data PortalFAM76A 
TCGA Data PortalFAM76A 
Broad Tumor PortalFAM76A
OASIS PortalFAM76A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM76A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM76A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM76A
DgiDB (Drug Gene Interaction Database)FAM76A
DoCM (Curated mutations)FAM76A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM76A (select a term)
intoGenFAM76A
Cancer3DFAM76A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM76A
MedgenFAM76A
Genetic Testing Registry FAM76A
NextProtQ8TAV0 [Medical]
TSGene199870
GENETestsFAM76A
Target ValidationFAM76A
Huge Navigator FAM76A [HugePedia]
snp3D : Map Gene to Disease199870
BioCentury BCIQFAM76A
ClinGenFAM76A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199870
Chemical/Pharm GKB GenePA142671837
Clinical trialFAM76A
Miscellaneous
canSAR (ICR)FAM76A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM76A
EVEXFAM76A
GoPubMedFAM76A
iHOPFAM76A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:07 CET 2017

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