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FAM78A (family with sequence similarity 78 member A)

Identity

Alias_namesC9orf59
chromosome 9 open reading frame 59
family with sequence similarity 78, member A
Alias_symbol (synonym)FLJ00024
Other alias
HGNC (Hugo) FAM78A
LocusID (NCBI) 286336
Atlas_Id 63245
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 131258078 and ends at 131276519 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM78A   25465
Cards
Entrez_Gene (NCBI)FAM78A  286336  family with sequence similarity 78 member A
AliasesC9orf59
GeneCards (Weizmann)FAM78A
Ensembl hg19 (Hinxton)ENSG00000126882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126882 [Gene_View]  chr9:131258078-131276519 [Contig_View]  FAM78A [Vega]
ICGC DataPortalENSG00000126882
TCGA cBioPortalFAM78A
AceView (NCBI)FAM78A
Genatlas (Paris)FAM78A
WikiGenes286336
SOURCE (Princeton)FAM78A
Genetics Home Reference (NIH)FAM78A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM78A  -     chr9:131258078-131276519 -  9q34.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM78A  -     9q34.13   [Description]    (hg19-Feb_2009)
EnsemblFAM78A - 9q34.13 [CytoView hg19]  FAM78A - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBIFAM78A [Mapview hg19]  FAM78A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024434 AK095423 BC029924 BC037559 BC049388
RefSeq transcript (Entrez)NM_033387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM78A
Cluster EST : UnigeneHs.704076 [ NCBI ]
CGAP (NCI)Hs.704076
Alternative Splicing GalleryENSG00000126882
Gene ExpressionFAM78A [ NCBI-GEO ]   FAM78A [ EBI - ARRAY_EXPRESS ]   FAM78A [ SEEK ]   FAM78A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM78A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286336
GTEX Portal (Tissue expression)FAM78A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JUQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JUQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JUQ0
Splice isoforms : SwissVarQ5JUQ0
PhosPhoSitePlusQ5JUQ0
Domains : Interpro (EBI)FAM78    FAM78A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM78A
DMDM Disease mutations286336
Blocks (Seattle)FAM78A
SuperfamilyQ5JUQ0
Human Protein AtlasENSG00000126882
Peptide AtlasQ5JUQ0
HPRD12968
IPIIPI00384349   IPI00552415   IPI00409663   
Protein Interaction databases
DIP (DOE-UCLA)Q5JUQ0
IntAct (EBI)Q5JUQ0
FunCoupENSG00000126882
BioGRIDFAM78A
STRING (EMBL)FAM78A
ZODIACFAM78A
Ontologies - Pathways
QuickGOQ5JUQ0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM78A
Atlas of Cancer Signalling NetworkFAM78A
Wikipedia pathwaysFAM78A
Orthology - Evolution
OrthoDB286336
GeneTree (enSembl)ENSG00000126882
Phylogenetic Trees/Animal Genes : TreeFamFAM78A
HOVERGENQ5JUQ0
HOGENOMQ5JUQ0
Homologs : HomoloGeneFAM78A
Homology/Alignments : Family Browser (UCSC)FAM78A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM78A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM78A
dbVarFAM78A
ClinVarFAM78A
1000_GenomesFAM78A 
Exome Variant ServerFAM78A
ExAC (Exome Aggregation Consortium)FAM78A (select the gene name)
Genetic variants : HAPMAP286336
Genomic Variants (DGV)FAM78A [DGVbeta]
DECIPHERFAM78A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM78A 
Mutations
ICGC Data PortalFAM78A 
TCGA Data PortalFAM78A 
Broad Tumor PortalFAM78A
OASIS PortalFAM78A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM78A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM78A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM78A
DgiDB (Drug Gene Interaction Database)FAM78A
DoCM (Curated mutations)FAM78A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM78A (select a term)
intoGenFAM78A
Cancer3DFAM78A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM78A
Genetic Testing Registry FAM78A
NextProtQ5JUQ0 [Medical]
TSGene286336
GENETestsFAM78A
Target ValidationFAM78A
Huge Navigator FAM78A [HugePedia]
snp3D : Map Gene to Disease286336
BioCentury BCIQFAM78A
ClinGenFAM78A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286336
Chemical/Pharm GKB GenePA134970135
Clinical trialFAM78A
Miscellaneous
canSAR (ICR)FAM78A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM78A
EVEXFAM78A
GoPubMedFAM78A
iHOPFAM78A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:45 CEST 2017

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