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FAM78B (family with sequence similarity 78 member B)

Identity

Alias_namesfamily with sequence similarity 78, member B
Other alias-
HGNC (Hugo) FAM78B
LocusID (NCBI) 149297
Atlas_Id 63246
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 166069299 and ends at 166166755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASH1L (1q22) / FAM78B (1q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM78B   13495
Cards
Entrez_Gene (NCBI)FAM78B  149297  family with sequence similarity 78 member B
Aliases
GeneCards (Weizmann)FAM78B
Ensembl hg19 (Hinxton)ENSG00000188859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188859 [Gene_View]  chr1:166069299-166166755 [Contig_View]  FAM78B [Vega]
ICGC DataPortalENSG00000188859
TCGA cBioPortalFAM78B
AceView (NCBI)FAM78B
Genatlas (Paris)FAM78B
WikiGenes149297
SOURCE (Princeton)FAM78B
Genetics Home Reference (NIH)FAM78B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM78B  -     chr1:166069299-166166755 -  1q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM78B  -     1q24.1   [Description]    (hg19-Feb_2009)
EnsemblFAM78B - 1q24.1 [CytoView hg19]  FAM78B - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBIFAM78B [Mapview hg19]  FAM78B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593134 AK055347 AK299946 BC114214 BF510138
RefSeq transcript (Entrez)NM_001017961 NM_001320302
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM78B
Cluster EST : UnigeneHs.555099 [ NCBI ]
CGAP (NCI)Hs.555099
Alternative Splicing GalleryENSG00000188859
Gene ExpressionFAM78B [ NCBI-GEO ]   FAM78B [ EBI - ARRAY_EXPRESS ]   FAM78B [ SEEK ]   FAM78B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM78B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149297
GTEX Portal (Tissue expression)FAM78B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT40
Splice isoforms : SwissVarQ5VT40
PhosPhoSitePlusQ5VT40
Domains : Interpro (EBI)FAM78    FAM78B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM78B
DMDM Disease mutations149297
Blocks (Seattle)FAM78B
SuperfamilyQ5VT40
Human Protein AtlasENSG00000188859
Peptide AtlasQ5VT40
HPRD18557
IPIIPI00415021   IPI00927858   IPI00926281   
Protein Interaction databases
DIP (DOE-UCLA)Q5VT40
IntAct (EBI)Q5VT40
FunCoupENSG00000188859
BioGRIDFAM78B
STRING (EMBL)FAM78B
ZODIACFAM78B
Ontologies - Pathways
QuickGOQ5VT40
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM78B
Atlas of Cancer Signalling NetworkFAM78B
Wikipedia pathwaysFAM78B
Orthology - Evolution
OrthoDB149297
GeneTree (enSembl)ENSG00000188859
Phylogenetic Trees/Animal Genes : TreeFamFAM78B
HOVERGENQ5VT40
HOGENOMQ5VT40
Homologs : HomoloGeneFAM78B
Homology/Alignments : Family Browser (UCSC)FAM78B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM78B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM78B
dbVarFAM78B
ClinVarFAM78B
1000_GenomesFAM78B 
Exome Variant ServerFAM78B
ExAC (Exome Aggregation Consortium)FAM78B (select the gene name)
Genetic variants : HAPMAP149297
Genomic Variants (DGV)FAM78B [DGVbeta]
DECIPHERFAM78B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM78B 
Mutations
ICGC Data PortalFAM78B 
TCGA Data PortalFAM78B 
Broad Tumor PortalFAM78B
OASIS PortalFAM78B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM78B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM78B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM78B
DgiDB (Drug Gene Interaction Database)FAM78B
DoCM (Curated mutations)FAM78B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM78B (select a term)
intoGenFAM78B
Cancer3DFAM78B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM78B
Genetic Testing Registry FAM78B
NextProtQ5VT40 [Medical]
TSGene149297
GENETestsFAM78B
Target ValidationFAM78B
Huge Navigator FAM78B [HugePedia]
snp3D : Map Gene to Disease149297
BioCentury BCIQFAM78B
ClinGenFAM78B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149297
Chemical/Pharm GKB GenePA142671841
Clinical trialFAM78B
Miscellaneous
canSAR (ICR)FAM78B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM78B
EVEXFAM78B
GoPubMedFAM78B
iHOPFAM78B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:12 CEST 2017

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