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FAM81B (family with sequence similarity 81 member B)

Identity

Alias_namesfamily with sequence similarity 81, member B
Alias_symbol (synonym)FLJ25333
Other alias-
HGNC (Hugo) FAM81B
LocusID (NCBI) 153643
Atlas_Id 63248
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 95391344 and ends at 95450440 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM81B (5q15) / FAM81B (5q15)FAM81B (5q15) / MALAT1 (11q13.1)TMEM161B (5q14.3) / FAM81B (5q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;5)(q14;q15) TMEM161B/FAM81B

External links

Nomenclature
HGNC (Hugo)FAM81B   26335
Cards
Entrez_Gene (NCBI)FAM81B  153643  family with sequence similarity 81 member B
Aliases
GeneCards (Weizmann)FAM81B
Ensembl hg19 (Hinxton)ENSG00000153347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153347 [Gene_View]  chr5:95391344-95450440 [Contig_View]  FAM81B [Vega]
ICGC DataPortalENSG00000153347
TCGA cBioPortalFAM81B
AceView (NCBI)FAM81B
Genatlas (Paris)FAM81B
WikiGenes153643
SOURCE (Princeton)FAM81B
Genetics Home Reference (NIH)FAM81B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM81B  -     chr5:95391344-95450440 +  5q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM81B  -     5q15   [Description]    (hg19-Feb_2009)
EnsemblFAM81B - 5q15 [CytoView hg19]  FAM81B - 5q15 [CytoView hg38]
Mapping of homologs : NCBIFAM81B [Mapview hg19]  FAM81B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058062 AK310245 BC034772 BM560335 JF432157
RefSeq transcript (Entrez)NM_152548
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM81B
Cluster EST : UnigeneHs.276287 [ NCBI ]
CGAP (NCI)Hs.276287
Alternative Splicing GalleryENSG00000153347
Gene ExpressionFAM81B [ NCBI-GEO ]   FAM81B [ EBI - ARRAY_EXPRESS ]   FAM81B [ SEEK ]   FAM81B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM81B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153643
GTEX Portal (Tissue expression)FAM81B
Human Protein AtlasENSG00000153347-FAM81B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LP2
Splice isoforms : SwissVarQ96LP2
PhosPhoSitePlusQ96LP2
Domains : Interpro (EBI)FAM81    FAM81B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM81B
DMDM Disease mutations153643
Blocks (Seattle)FAM81B
SuperfamilyQ96LP2
Human Protein Atlas [tissue]ENSG00000153347-FAM81B [tissue]
Peptide AtlasQ96LP2
HPRD08686
IPIIPI00744669   IPI00967619   IPI00967348   IPI00964754   IPI00964490   IPI00965518   IPI00964129   
Protein Interaction databases
DIP (DOE-UCLA)Q96LP2
IntAct (EBI)Q96LP2
FunCoupENSG00000153347
BioGRIDFAM81B
STRING (EMBL)FAM81B
ZODIACFAM81B
Ontologies - Pathways
QuickGOQ96LP2
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkFAM81B
Atlas of Cancer Signalling NetworkFAM81B
Wikipedia pathwaysFAM81B
Orthology - Evolution
OrthoDB153643
GeneTree (enSembl)ENSG00000153347
Phylogenetic Trees/Animal Genes : TreeFamFAM81B
HOVERGENQ96LP2
HOGENOMQ96LP2
Homologs : HomoloGeneFAM81B
Homology/Alignments : Family Browser (UCSC)FAM81B
Gene fusions - Rearrangements
Fusion : QuiverFAM81B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM81B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM81B
dbVarFAM81B
ClinVarFAM81B
1000_GenomesFAM81B 
Exome Variant ServerFAM81B
ExAC (Exome Aggregation Consortium)ENSG00000153347
GNOMAD BrowserENSG00000153347
Genetic variants : HAPMAP153643
Genomic Variants (DGV)FAM81B [DGVbeta]
DECIPHERFAM81B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM81B 
Mutations
ICGC Data PortalFAM81B 
TCGA Data PortalFAM81B 
Broad Tumor PortalFAM81B
OASIS PortalFAM81B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM81B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM81B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM81B
DgiDB (Drug Gene Interaction Database)FAM81B
DoCM (Curated mutations)FAM81B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM81B (select a term)
intoGenFAM81B
Cancer3DFAM81B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM81B
MedgenFAM81B
Genetic Testing Registry FAM81B
NextProtQ96LP2 [Medical]
TSGene153643
GENETestsFAM81B
Target ValidationFAM81B
Huge Navigator FAM81B [HugePedia]
snp3D : Map Gene to Disease153643
BioCentury BCIQFAM81B
ClinGenFAM81B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153643
Chemical/Pharm GKB GenePA142671847
Clinical trialFAM81B
Miscellaneous
canSAR (ICR)FAM81B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM81B
EVEXFAM81B
GoPubMedFAM81B
iHOPFAM81B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:18:41 CET 2018
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