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FAM83A (family with sequence similarity 83 member A)

Identity

Alias_namesfamily with sequence similarity 83
Alias_symbol (synonym)MGC14128
BJ-TSA-9
Other alias
HGNC (Hugo) FAM83A
LocusID (NCBI) 84985
Atlas_Id 43791
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 124194266 and ends at 124222319 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM83A (8q24.13) / FAM83A (8q24.13)FAM83A (8q24.13) / WDR91 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM83A   28210
Cards
Entrez_Gene (NCBI)FAM83A  84985  family with sequence similarity 83 member A
AliasesBJ-TSA-9
GeneCards (Weizmann)FAM83A
Ensembl hg19 (Hinxton)ENSG00000147689 [Gene_View]  chr8:124194266-124222319 [Contig_View]  FAM83A [Vega]
Ensembl hg38 (Hinxton)ENSG00000147689 [Gene_View]  chr8:124194266-124222319 [Contig_View]  FAM83A [Vega]
ICGC DataPortalENSG00000147689
TCGA cBioPortalFAM83A
AceView (NCBI)FAM83A
Genatlas (Paris)FAM83A
WikiGenes84985
SOURCE (Princeton)FAM83A
Genetics Home Reference (NIH)FAM83A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM83A  -     chr8:124194266-124222319 +  8q24.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM83A  -     8q24.13   [Description]    (hg38-Dec_2013)
EnsemblFAM83A - 8q24.13 [CytoView hg19]  FAM83A - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBIFAM83A [Mapview hg19]  FAM83A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA838226 AF497803 AI677966 AK095301 AK098407
RefSeq transcript (Entrez)NM_001288587 NM_001321630 NM_032899 NM_207006
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)FAM83A
Cluster EST : UnigeneHs.679530 [ NCBI ]
CGAP (NCI)Hs.679530
Alternative Splicing GalleryENSG00000147689
Gene ExpressionFAM83A [ NCBI-GEO ]   FAM83A [ EBI - ARRAY_EXPRESS ]   FAM83A [ SEEK ]   FAM83A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM83A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84985
GTEX Portal (Tissue expression)FAM83A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UY5
Splice isoforms : SwissVarQ86UY5
PhosPhoSitePlusQ86UY5
Domains : Interpro (EBI)DUF1669   
Domain families : Pfam (Sanger)DUF1669 (PF07894)   
Domain families : Pfam (NCBI)pfam07894   
Conserved Domain (NCBI)FAM83A
DMDM Disease mutations84985
Blocks (Seattle)FAM83A
PDB (SRS)4URJ   
PDB (PDBSum)4URJ   
PDB (IMB)4URJ   
PDB (RSDB)4URJ   
Structural Biology KnowledgeBase4URJ   
SCOP (Structural Classification of Proteins)4URJ   
CATH (Classification of proteins structures)4URJ   
SuperfamilyQ86UY5
Human Protein AtlasENSG00000147689
Peptide AtlasQ86UY5
HPRD17489
IPIIPI00328846   IPI00063301   IPI00419846   
Protein Interaction databases
DIP (DOE-UCLA)Q86UY5
IntAct (EBI)Q86UY5
FunCoupENSG00000147689
BioGRIDFAM83A
STRING (EMBL)FAM83A
ZODIACFAM83A
Ontologies - Pathways
QuickGOQ86UY5
Ontology : AmiGOprotein binding  cytoplasm  epidermal growth factor receptor signaling pathway  cell proliferation  protein kinase binding  protein kinase binding  phosphatidylinositol 3-kinase regulatory subunit binding  
Ontology : EGO-EBIprotein binding  cytoplasm  epidermal growth factor receptor signaling pathway  cell proliferation  protein kinase binding  protein kinase binding  phosphatidylinositol 3-kinase regulatory subunit binding  
NDEx NetworkFAM83A
Atlas of Cancer Signalling NetworkFAM83A
Wikipedia pathwaysFAM83A
Orthology - Evolution
OrthoDB84985
GeneTree (enSembl)ENSG00000147689
Phylogenetic Trees/Animal Genes : TreeFamFAM83A
HOVERGENQ86UY5
HOGENOMQ86UY5
Homologs : HomoloGeneFAM83A
Homology/Alignments : Family Browser (UCSC)FAM83A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM83A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM83A
dbVarFAM83A
ClinVarFAM83A
1000_GenomesFAM83A 
Exome Variant ServerFAM83A
ExAC (Exome Aggregation Consortium)FAM83A (select the gene name)
Genetic variants : HAPMAP84985
Genomic Variants (DGV)FAM83A [DGVbeta]
DECIPHER (Syndromes)8:124194266-124222319  ENSG00000147689
CONAN: Copy Number AnalysisFAM83A 
Mutations
ICGC Data PortalFAM83A 
TCGA Data PortalFAM83A 
Broad Tumor PortalFAM83A
OASIS PortalFAM83A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM83A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM83A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM83A
DgiDB (Drug Gene Interaction Database)FAM83A
DoCM (Curated mutations)FAM83A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM83A (select a term)
intoGenFAM83A
Cancer3DFAM83A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM83A
Genetic Testing Registry FAM83A
NextProtQ86UY5 [Medical]
TSGene84985
GENETestsFAM83A
Huge Navigator FAM83A [HugePedia]
snp3D : Map Gene to Disease84985
BioCentury BCIQFAM83A
ClinGenFAM83A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84985
Chemical/Pharm GKB GenePA142671851
Clinical trialFAM83A
Miscellaneous
canSAR (ICR)FAM83A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM83A
EVEXFAM83A
GoPubMedFAM83A
iHOPFAM83A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:33 CET 2017

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