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FAM83C (family with sequence similarity 83, member C)

Identity

Alias_namesC20orf128
chromosome 20 open reading frame 128
family with sequence similarity 83, member C
Alias_symbol (synonym)dJ614O4.7
Other alias
HGNC (Hugo) FAM83C
LocusID (NCBI) 128876
Atlas_Id 63250
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33873534 and ends at 33880225 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM83C   16121
Cards
Entrez_Gene (NCBI)FAM83C  128876  family with sequence similarity 83, member C
AliasesC20orf128; dJ614O4.7
GeneCards (Weizmann)FAM83C
Ensembl hg19 (Hinxton)ENSG00000125998 [Gene_View]  chr20:33873534-33880225 [Contig_View]  FAM83C [Vega]
Ensembl hg38 (Hinxton)ENSG00000125998 [Gene_View]  chr20:33873534-33880225 [Contig_View]  FAM83C [Vega]
ICGC DataPortalENSG00000125998
TCGA cBioPortalFAM83C
AceView (NCBI)FAM83C
Genatlas (Paris)FAM83C
WikiGenes128876
SOURCE (Princeton)FAM83C
Genetics Home Reference (NIH)FAM83C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM83C  -     chr20:33873534-33880225 -  20q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM83C  -     20q11.22   [Description]    (hg38-Dec_2013)
EnsemblFAM83C - 20q11.22 [CytoView hg19]  FAM83C - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIFAM83C [Mapview hg19]  FAM83C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091116 AK091138 BC113483 DA433905
RefSeq transcript (Entrez)NM_178468
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)FAM83C
Cluster EST : UnigeneHs.592149 [ NCBI ]
CGAP (NCI)Hs.592149
Alternative Splicing GalleryENSG00000125998
Gene ExpressionFAM83C [ NCBI-GEO ]   FAM83C [ EBI - ARRAY_EXPRESS ]   FAM83C [ SEEK ]   FAM83C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM83C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128876
GTEX Portal (Tissue expression)FAM83C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQN1
Splice isoforms : SwissVarQ9BQN1
PhosPhoSitePlusQ9BQN1
Domains : Interpro (EBI)DUF1669   
Domain families : Pfam (Sanger)DUF1669 (PF07894)   
Domain families : Pfam (NCBI)pfam07894   
Conserved Domain (NCBI)FAM83C
DMDM Disease mutations128876
Blocks (Seattle)FAM83C
SuperfamilyQ9BQN1
Human Protein AtlasENSG00000125998
Peptide AtlasQ9BQN1
HPRD12743
IPIIPI00552930   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQN1
IntAct (EBI)Q9BQN1
FunCoupENSG00000125998
BioGRIDFAM83C
STRING (EMBL)FAM83C
ZODIACFAM83C
Ontologies - Pathways
QuickGOQ9BQN1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM83C
Atlas of Cancer Signalling NetworkFAM83C
Wikipedia pathwaysFAM83C
Orthology - Evolution
OrthoDB128876
GeneTree (enSembl)ENSG00000125998
Phylogenetic Trees/Animal Genes : TreeFamFAM83C
HOVERGENQ9BQN1
HOGENOMQ9BQN1
Homologs : HomoloGeneFAM83C
Homology/Alignments : Family Browser (UCSC)FAM83C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM83C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM83C
dbVarFAM83C
ClinVarFAM83C
1000_GenomesFAM83C 
Exome Variant ServerFAM83C
ExAC (Exome Aggregation Consortium)FAM83C (select the gene name)
Genetic variants : HAPMAP128876
Genomic Variants (DGV)FAM83C [DGVbeta]
DECIPHER (Syndromes)20:33873534-33880225  ENSG00000125998
CONAN: Copy Number AnalysisFAM83C 
Mutations
ICGC Data PortalFAM83C 
TCGA Data PortalFAM83C 
Broad Tumor PortalFAM83C
OASIS PortalFAM83C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM83C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM83C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM83C
DgiDB (Drug Gene Interaction Database)FAM83C
DoCM (Curated mutations)FAM83C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM83C (select a term)
intoGenFAM83C
Cancer3DFAM83C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM83C
Genetic Testing Registry FAM83C
NextProtQ9BQN1 [Medical]
TSGene128876
GENETestsFAM83C
Huge Navigator FAM83C [HugePedia]
snp3D : Map Gene to Disease128876
BioCentury BCIQFAM83C
ClinGenFAM83C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128876
Chemical/Pharm GKB GenePA25669
Clinical trialFAM83C
Miscellaneous
canSAR (ICR)FAM83C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM83C
EVEXFAM83C
GoPubMedFAM83C
iHOPFAM83C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:21 CET 2017

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