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FAM83D (family with sequence similarity 83 member D)

Identity

Alias_namesC20orf129
chromosome 20 open reading frame 129
family with sequence similarity 83, member D
Alias_symbol (synonym)dJ616B8.3
Other aliasCHICA
HGNC (Hugo) FAM83D
LocusID (NCBI) 81610
Atlas_Id 55023
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 37554955 and ends at 37581703 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM83D (20q11.23) / SF3B3 (16q22.1)FAM83D (20q11.23) / SPECC1L (22q11.23)ZNF107 (7q11.21) / FAM83D (20q11.23)
FAM83D 20q11.23 / SF3B3 16q22.1FAM83D 20q11.23 / SPECC1L 22q11.23ZNF107 7q11.21 / FAM83D 20q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM83D   16122
Cards
Entrez_Gene (NCBI)FAM83D  81610  family with sequence similarity 83 member D
AliasesC20orf129; CHICA; dJ616B8.3
GeneCards (Weizmann)FAM83D
Ensembl hg19 (Hinxton)ENSG00000101447 [Gene_View]  chr20:37554955-37581703 [Contig_View]  FAM83D [Vega]
Ensembl hg38 (Hinxton)ENSG00000101447 [Gene_View]  chr20:37554955-37581703 [Contig_View]  FAM83D [Vega]
ICGC DataPortalENSG00000101447
TCGA cBioPortalFAM83D
AceView (NCBI)FAM83D
Genatlas (Paris)FAM83D
WikiGenes81610
SOURCE (Princeton)FAM83D
Genetics Home Reference (NIH)FAM83D
Genomic and cartography
GoldenPath hg19 (UCSC)FAM83D  -     chr20:37554955-37581703 +  20q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM83D  -     20q11.23   [Description]    (hg38-Dec_2013)
EnsemblFAM83D - 20q11.23 [CytoView hg19]  FAM83D - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIFAM83D [Mapview hg19]  FAM83D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055793 AK095660 AK303860 AL832274 BC001068
RefSeq transcript (Entrez)NM_030919
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)FAM83D
Cluster EST : UnigeneHs.726442 [ NCBI ]
CGAP (NCI)Hs.726442
Alternative Splicing GalleryENSG00000101447
Gene ExpressionFAM83D [ NCBI-GEO ]   FAM83D [ EBI - ARRAY_EXPRESS ]   FAM83D [ SEEK ]   FAM83D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM83D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81610
GTEX Portal (Tissue expression)FAM83D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4H8
Splice isoforms : SwissVarQ9H4H8
PhosPhoSitePlusQ9H4H8
Domains : Interpro (EBI)DUF1669   
Domain families : Pfam (Sanger)DUF1669 (PF07894)   
Domain families : Pfam (NCBI)pfam07894   
Conserved Domain (NCBI)FAM83D
DMDM Disease mutations81610
Blocks (Seattle)FAM83D
PDB (SRS)5E0L    5E0M   
PDB (PDBSum)5E0L    5E0M   
PDB (IMB)5E0L    5E0M   
PDB (RSDB)5E0L    5E0M   
Structural Biology KnowledgeBase5E0L    5E0M   
SCOP (Structural Classification of Proteins)5E0L    5E0M   
CATH (Classification of proteins structures)5E0L    5E0M   
SuperfamilyQ9H4H8
Human Protein AtlasENSG00000101447
Peptide AtlasQ9H4H8
HPRD12744
IPIIPI00922140   IPI00480103   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4H8
IntAct (EBI)Q9H4H8
FunCoupENSG00000101447
BioGRIDFAM83D
STRING (EMBL)FAM83D
ZODIACFAM83D
Ontologies - Pathways
QuickGOQ9H4H8
Ontology : AmiGOepithelial to mesenchymal transition  protein binding  cytoplasm  cytoplasm  mitotic nuclear division  microtubule binding  cell proliferation  cell migration  kinesin binding  protein kinase binding  regulation of TOR signaling  regulation of protein catabolic process  cell division  metaphase plate congression  regulation of ERK1 and ERK2 cascade  mitotic spindle pole  protein localization to mitotic spindle  positive regulation of cell cycle G1/S phase transition  
Ontology : EGO-EBIepithelial to mesenchymal transition  protein binding  cytoplasm  cytoplasm  mitotic nuclear division  microtubule binding  cell proliferation  cell migration  kinesin binding  protein kinase binding  regulation of TOR signaling  regulation of protein catabolic process  cell division  metaphase plate congression  regulation of ERK1 and ERK2 cascade  mitotic spindle pole  protein localization to mitotic spindle  positive regulation of cell cycle G1/S phase transition  
NDEx NetworkFAM83D
Atlas of Cancer Signalling NetworkFAM83D
Wikipedia pathwaysFAM83D
Orthology - Evolution
OrthoDB81610
GeneTree (enSembl)ENSG00000101447
Phylogenetic Trees/Animal Genes : TreeFamFAM83D
HOVERGENQ9H4H8
HOGENOMQ9H4H8
Homologs : HomoloGeneFAM83D
Homology/Alignments : Family Browser (UCSC)FAM83D
Gene fusions - Rearrangements
Fusion : MitelmanFAM83D/SF3B3 [20q11.23/16q22.1]  
Fusion : MitelmanFAM83D/SPECC1L [20q11.23/22q11.23]  [t(20;22)(q11;q11)]  
Fusion : MitelmanZNF107/FAM83D [7q11.21/20q11.23]  [t(7;20)(q11;q11)]  
Fusion: TCGAFAM83D 20q11.23 SF3B3 16q22.1 BRCA
Fusion: TCGAFAM83D 20q11.23 SPECC1L 22q11.23 BRCA
Fusion: TCGAZNF107 7q11.21 FAM83D 20q11.23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM83D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM83D
dbVarFAM83D
ClinVarFAM83D
1000_GenomesFAM83D 
Exome Variant ServerFAM83D
ExAC (Exome Aggregation Consortium)FAM83D (select the gene name)
Genetic variants : HAPMAP81610
Genomic Variants (DGV)FAM83D [DGVbeta]
DECIPHER (Syndromes)20:37554955-37581703  ENSG00000101447
CONAN: Copy Number AnalysisFAM83D 
Mutations
ICGC Data PortalFAM83D 
TCGA Data PortalFAM83D 
Broad Tumor PortalFAM83D
OASIS PortalFAM83D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM83D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM83D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM83D
DgiDB (Drug Gene Interaction Database)FAM83D
DoCM (Curated mutations)FAM83D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM83D (select a term)
intoGenFAM83D
Cancer3DFAM83D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM83D
Genetic Testing Registry FAM83D
NextProtQ9H4H8 [Medical]
TSGene81610
GENETestsFAM83D
Huge Navigator FAM83D [HugePedia]
snp3D : Map Gene to Disease81610
BioCentury BCIQFAM83D
ClinGenFAM83D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81610
Chemical/Pharm GKB GenePA25670
Clinical trialFAM83D
Miscellaneous
canSAR (ICR)FAM83D (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM83D
EVEXFAM83D
GoPubMedFAM83D
iHOPFAM83D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:05:33 CET 2017

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