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FAM83E (family with sequence similarity 83 member E)

Identity

Alias_namesfamily with sequence similarity 83, member E
Alias_symbol (synonym)FLJ20200
Other alias-
HGNC (Hugo) FAM83E
LocusID (NCBI) 54854
Atlas_Id 63253
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48600600 and ends at 48613437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUCB1 (19q13.33) / FAM83E (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM83E   25972
Cards
Entrez_Gene (NCBI)FAM83E  54854  family with sequence similarity 83 member E
Aliases
GeneCards (Weizmann)FAM83E
Ensembl hg19 (Hinxton)ENSG00000105523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105523 [Gene_View]  chr19:48600600-48613437 [Contig_View]  FAM83E [Vega]
ICGC DataPortalENSG00000105523
TCGA cBioPortalFAM83E
AceView (NCBI)FAM83E
Genatlas (Paris)FAM83E
WikiGenes54854
SOURCE (Princeton)FAM83E
Genetics Home Reference (NIH)FAM83E
Genomic and cartography
GoldenPath hg38 (UCSC)FAM83E  -     chr19:48600600-48613437 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM83E  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblFAM83E - 19q13.33 [CytoView hg19]  FAM83E - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIFAM83E [Mapview hg19]  FAM83E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000207 BC111970 BC111972 CD722642
RefSeq transcript (Entrez)NM_017708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM83E
Cluster EST : UnigeneHs.165803 [ NCBI ]
CGAP (NCI)Hs.165803
Alternative Splicing GalleryENSG00000105523
Gene ExpressionFAM83E [ NCBI-GEO ]   FAM83E [ EBI - ARRAY_EXPRESS ]   FAM83E [ SEEK ]   FAM83E [ MEM ]
Gene Expression Viewer (FireBrowse)FAM83E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54854
GTEX Portal (Tissue expression)FAM83E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2I3
Splice isoforms : SwissVarQ2M2I3
PhosPhoSitePlusQ2M2I3
Domains : Interpro (EBI)DUF1669   
Domain families : Pfam (Sanger)DUF1669 (PF07894)   
Domain families : Pfam (NCBI)pfam07894   
Conserved Domain (NCBI)FAM83E
DMDM Disease mutations54854
Blocks (Seattle)FAM83E
SuperfamilyQ2M2I3
Human Protein AtlasENSG00000105523
Peptide AtlasQ2M2I3
HPRD07883
IPIIPI00015023   
Protein Interaction databases
DIP (DOE-UCLA)Q2M2I3
IntAct (EBI)Q2M2I3
FunCoupENSG00000105523
BioGRIDFAM83E
STRING (EMBL)FAM83E
ZODIACFAM83E
Ontologies - Pathways
QuickGOQ2M2I3
Ontology : AmiGOprotein kinase binding  
Ontology : EGO-EBIprotein kinase binding  
NDEx NetworkFAM83E
Atlas of Cancer Signalling NetworkFAM83E
Wikipedia pathwaysFAM83E
Orthology - Evolution
OrthoDB54854
GeneTree (enSembl)ENSG00000105523
Phylogenetic Trees/Animal Genes : TreeFamFAM83E
HOVERGENQ2M2I3
HOGENOMQ2M2I3
Homologs : HomoloGeneFAM83E
Homology/Alignments : Family Browser (UCSC)FAM83E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM83E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM83E
dbVarFAM83E
ClinVarFAM83E
1000_GenomesFAM83E 
Exome Variant ServerFAM83E
ExAC (Exome Aggregation Consortium)FAM83E (select the gene name)
Genetic variants : HAPMAP54854
Genomic Variants (DGV)FAM83E [DGVbeta]
DECIPHERFAM83E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM83E 
Mutations
ICGC Data PortalFAM83E 
TCGA Data PortalFAM83E 
Broad Tumor PortalFAM83E
OASIS PortalFAM83E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM83E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM83E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM83E
DgiDB (Drug Gene Interaction Database)FAM83E
DoCM (Curated mutations)FAM83E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM83E (select a term)
intoGenFAM83E
Cancer3DFAM83E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM83E
Genetic Testing Registry FAM83E
NextProtQ2M2I3 [Medical]
TSGene54854
GENETestsFAM83E
Target ValidationFAM83E
Huge Navigator FAM83E [HugePedia]
snp3D : Map Gene to Disease54854
BioCentury BCIQFAM83E
ClinGenFAM83E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54854
Chemical/Pharm GKB GenePA142671852
Clinical trialFAM83E
Miscellaneous
canSAR (ICR)FAM83E (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM83E
EVEXFAM83E
GoPubMedFAM83E
iHOPFAM83E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:46 CEST 2017

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