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FAM83F (family with sequence similarity 83 member F)

Identity

Alias_namesfamily with sequence similarity 83, member F
Other alias-
HGNC (Hugo) FAM83F
LocusID (NCBI) 113828
Atlas_Id 63254
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39994949 and ends at 40030039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RTCB (22q12.3) / FAM83F (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM83F   25148
Cards
Entrez_Gene (NCBI)FAM83F  113828  family with sequence similarity 83 member F
Aliases
GeneCards (Weizmann)FAM83F
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:39994949-40030039 [Contig_View]  FAM83F [Vega]
TCGA cBioPortalFAM83F
AceView (NCBI)FAM83F
Genatlas (Paris)FAM83F
WikiGenes113828
SOURCE (Princeton)FAM83F
Genetics Home Reference (NIH)FAM83F
Genomic and cartography
GoldenPath hg38 (UCSC)FAM83F  -     chr22:39994949-40030039 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM83F  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblFAM83F - 22q13.1 [CytoView hg19]  FAM83F - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIFAM83F [Mapview hg19]  FAM83F [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311584 BC011204 BC031099
RefSeq transcript (Entrez)NM_138435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM83F
Cluster EST : UnigeneHs.197680 [ NCBI ]
CGAP (NCI)Hs.197680
Gene ExpressionFAM83F [ NCBI-GEO ]   FAM83F [ EBI - ARRAY_EXPRESS ]   FAM83F [ SEEK ]   FAM83F [ MEM ]
Gene Expression Viewer (FireBrowse)FAM83F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113828
GTEX Portal (Tissue expression)FAM83F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEG4
Splice isoforms : SwissVarQ8NEG4
PhosPhoSitePlusQ8NEG4
Domains : Interpro (EBI)DUF1669   
Domain families : Pfam (Sanger)DUF1669 (PF07894)   
Domain families : Pfam (NCBI)pfam07894   
Conserved Domain (NCBI)FAM83F
DMDM Disease mutations113828
Blocks (Seattle)FAM83F
SuperfamilyQ8NEG4
Peptide AtlasQ8NEG4
HPRD11228
IPIIPI00335121   IPI00396418   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEG4
IntAct (EBI)Q8NEG4
BioGRIDFAM83F
STRING (EMBL)FAM83F
ZODIACFAM83F
Ontologies - Pathways
QuickGOQ8NEG4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM83F
Atlas of Cancer Signalling NetworkFAM83F
Wikipedia pathwaysFAM83F
Orthology - Evolution
OrthoDB113828
Phylogenetic Trees/Animal Genes : TreeFamFAM83F
HOVERGENQ8NEG4
HOGENOMQ8NEG4
Homologs : HomoloGeneFAM83F
Homology/Alignments : Family Browser (UCSC)FAM83F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM83F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM83F
dbVarFAM83F
ClinVarFAM83F
1000_GenomesFAM83F 
Exome Variant ServerFAM83F
ExAC (Exome Aggregation Consortium)FAM83F (select the gene name)
Genetic variants : HAPMAP113828
Genomic Variants (DGV)FAM83F [DGVbeta]
DECIPHERFAM83F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM83F 
Mutations
ICGC Data PortalFAM83F 
TCGA Data PortalFAM83F 
Broad Tumor PortalFAM83F
OASIS PortalFAM83F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM83F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM83F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM83F
DgiDB (Drug Gene Interaction Database)FAM83F
DoCM (Curated mutations)FAM83F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM83F (select a term)
intoGenFAM83F
Cancer3DFAM83F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM83F
Genetic Testing Registry FAM83F
NextProtQ8NEG4 [Medical]
TSGene113828
GENETestsFAM83F
Target ValidationFAM83F
Huge Navigator FAM83F [HugePedia]
snp3D : Map Gene to Disease113828
BioCentury BCIQFAM83F
ClinGenFAM83F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113828
Chemical/Pharm GKB GenePA142671853
Clinical trialFAM83F
Miscellaneous
canSAR (ICR)FAM83F (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM83F
EVEXFAM83F
GoPubMedFAM83F
iHOPFAM83F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:47 CEST 2017

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