Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM83G (family with sequence similarity 83 member G)

Identity

Alias (NCBI)PAWS1
HGNC (Hugo) FAM83G
HGNC Alias symbFLJ41564
PAWS1
HGNC Alias nameprotein associated with SMAD1
HGNC Previous namefamily with sequence similarity 83, member G
LocusID (NCBI) 644815
Atlas_Id 63255
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18971068 and ends at 19004747 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM83G (17p11.2) / GRAP (17p11.2)FAM83G (17p11.2) / TTC19 (17p12)FAM83G TTC19
FAM83G GRAP

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  FAM83G/GRAP (17p11)
t(17;17)(p11;p12) FAM83G/TTC19


External links

Nomenclature
HGNC (Hugo)FAM83G   32554
Cards
Entrez_Gene (NCBI)FAM83G    family with sequence similarity 83 member G
AliasesPAWS1
GeneCards (Weizmann)FAM83G
Ensembl hg19 (Hinxton)ENSG00000188522 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188522 [Gene_View]  ENSG00000188522 [Sequence]  chr17:18971068-19004747 [Contig_View]  FAM83G [Vega]
ICGC DataPortalENSG00000188522
TCGA cBioPortalFAM83G
AceView (NCBI)FAM83G
Genatlas (Paris)FAM83G
SOURCE (Princeton)FAM83G
Genetics Home Reference (NIH)FAM83G
Genomic and cartography
GoldenPath hg38 (UCSC)FAM83G  -     chr17:18971068-19004747 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM83G  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathFAM83G - 17p11.2 [CytoView hg19]  FAM83G - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000188522
genome Data Viewer NCBIFAM83G [Mapview hg19]  
OMIM615886   
Gene and transcription
Genbank (Entrez)AK123558 BC105988 BX365956 BX402942 CF138357
RefSeq transcript (Entrez)NM_001039999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM83G
Alternative Splicing GalleryENSG00000188522
Gene ExpressionFAM83G [ NCBI-GEO ]   FAM83G [ EBI - ARRAY_EXPRESS ]   FAM83G [ SEEK ]   FAM83G [ MEM ]
Gene Expression Viewer (FireBrowse)FAM83G [ Firebrowse - Broad ]
GenevisibleExpression of FAM83G in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644815
GTEX Portal (Tissue expression)FAM83G
Human Protein AtlasENSG00000188522-FAM83G [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6ND36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6ND36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6ND36
Splice isoforms : SwissVarA6ND36
PhosPhoSitePlusA6ND36
Domains : Interpro (EBI)FAM83_N   
Domain families : Pfam (Sanger)FAM83 (PF07894)   
Domain families : Pfam (NCBI)pfam07894   
Conserved Domain (NCBI)FAM83G
Blocks (Seattle)FAM83G
SuperfamilyA6ND36
Human Protein Atlas [tissue]ENSG00000188522-FAM83G [tissue]
Peptide AtlasA6ND36
IPIIPI00419166   IPI00854824   IPI00793090   
Protein Interaction databases
DIP (DOE-UCLA)A6ND36
IntAct (EBI)A6ND36
BioGRIDFAM83G
STRING (EMBL)FAM83G
ZODIACFAM83G
Ontologies - Pathways
QuickGOA6ND36
Ontology : AmiGOprotein binding  nucleus  cytosol  BMP signaling pathway  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  BMP signaling pathway  
NDEx NetworkFAM83G
Atlas of Cancer Signalling NetworkFAM83G
Wikipedia pathwaysFAM83G
Orthology - Evolution
OrthoDB644815
GeneTree (enSembl)ENSG00000188522
Phylogenetic Trees/Animal Genes : TreeFamFAM83G
HOGENOMA6ND36
Homologs : HomoloGeneFAM83G
Homology/Alignments : Family Browser (UCSC)FAM83G
Gene fusions - Rearrangements
Fusion PortalFAM83G TTC19
Fusion PortalFAM83G GRAP
Fusion : QuiverFAM83G
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM83G [hg38]
dbVarFAM83G
ClinVarFAM83G
MonarchFAM83G
1000_GenomesFAM83G 
Exome Variant ServerFAM83G
GNOMAD BrowserENSG00000188522
Varsome BrowserFAM83G
Genomic Variants (DGV)FAM83G [DGVbeta]
DECIPHERFAM83G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM83G 
Mutations
ICGC Data PortalFAM83G 
TCGA Data PortalFAM83G 
Broad Tumor PortalFAM83G
OASIS PortalFAM83G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM83G  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM83G
Mutations and Diseases : HGMDFAM83G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM83G
DgiDB (Drug Gene Interaction Database)FAM83G
DoCM (Curated mutations)FAM83G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM83G (select a term)
intoGenFAM83G
Cancer3DFAM83G(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615886   
Orphanet
DisGeNETFAM83G
MedgenFAM83G
Genetic Testing Registry FAM83G
NextProtA6ND36 [Medical]
GENETestsFAM83G
Target ValidationFAM83G
Huge Navigator FAM83G [HugePedia]
ClinGenFAM83G
Clinical trials, drugs, therapy
MyCancerGenomeFAM83G
Protein Interactions : CTD
Pharm GKB GenePA144596433
Clinical trialFAM83G
Miscellaneous
canSAR (ICR)FAM83G (select the gene name)
HarmonizomeFAM83G
DataMed IndexFAM83G
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM83G
EVEXFAM83G
GoPubMedFAM83G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:54:15 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.