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FAM84A (family with sequence similarity 84 member A)

Identity

Alias_namesfamily with sequence similarity 84
Alias_symbol (synonym)NSE1
FLJ35392
Other aliasPP11517
HGNC (Hugo) FAM84A
LocusID (NCBI) 151354
Atlas_Id 43795
Location 2p24.3  [Link to chromosome band 2p24]
Location_base_pair Starts at 14632683 and ends at 14640044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM84A (2p24.3) / FAM84A (2p24.3)FAM84A (2p24.3) / LARP1 (5q33.2)ID4 (6p22.3) / FAM84A (2p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)FAM84A   20743
Cards
Entrez_Gene (NCBI)FAM84A  151354  family with sequence similarity 84 member A
AliasesNSE1; PP11517
GeneCards (Weizmann)FAM84A
Ensembl hg19 (Hinxton)ENSG00000162981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162981 [Gene_View]  chr2:14632683-14640044 [Contig_View]  FAM84A [Vega]
ICGC DataPortalENSG00000162981
TCGA cBioPortalFAM84A
AceView (NCBI)FAM84A
Genatlas (Paris)FAM84A
WikiGenes151354
SOURCE (Princeton)FAM84A
Genetics Home Reference (NIH)FAM84A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM84A  -     chr2:14632683-14640044 +  2p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM84A  -     2p24.3   [Description]    (hg19-Feb_2009)
EnsemblFAM84A - 2p24.3 [CytoView hg19]  FAM84A - 2p24.3 [CytoView hg38]
Mapping of homologs : NCBIFAM84A [Mapview hg19]  FAM84A [Mapview hg38]
OMIM611234   
Gene and transcription
Genbank (Entrez)AF086407 AF370404 AI432449 AJ417080 AK092654
RefSeq transcript (Entrez)NM_001291410 NM_145175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM84A
Cluster EST : UnigeneHs.657296 [ NCBI ]
CGAP (NCI)Hs.657296
Alternative Splicing GalleryENSG00000162981
Gene ExpressionFAM84A [ NCBI-GEO ]   FAM84A [ EBI - ARRAY_EXPRESS ]   FAM84A [ SEEK ]   FAM84A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM84A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151354
GTEX Portal (Tissue expression)FAM84A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KN4
Splice isoforms : SwissVarQ96KN4
PhosPhoSitePlusQ96KN4
Domains : Interpro (EBI)LRAT-like_dom   
Domain families : Pfam (Sanger)LRAT (PF04970)   
Domain families : Pfam (NCBI)pfam04970   
Conserved Domain (NCBI)FAM84A
DMDM Disease mutations151354
Blocks (Seattle)FAM84A
SuperfamilyQ96KN4
Human Protein AtlasENSG00000162981
Peptide AtlasQ96KN4
HPRD17647
IPIIPI00328853   IPI00655687   IPI00435936   IPI00167995   
Protein Interaction databases
DIP (DOE-UCLA)Q96KN4
IntAct (EBI)Q96KN4
FunCoupENSG00000162981
BioGRIDFAM84A
STRING (EMBL)FAM84A
ZODIACFAM84A
Ontologies - Pathways
QuickGOQ96KN4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM84A
Atlas of Cancer Signalling NetworkFAM84A
Wikipedia pathwaysFAM84A
Orthology - Evolution
OrthoDB151354
GeneTree (enSembl)ENSG00000162981
Phylogenetic Trees/Animal Genes : TreeFamFAM84A
HOVERGENQ96KN4
HOGENOMQ96KN4
Homologs : HomoloGeneFAM84A
Homology/Alignments : Family Browser (UCSC)FAM84A
Gene fusions - Rearrangements
Fusion : MitelmanID4/FAM84A [6p22.3/2p24.3]  [t(2;6)(p24;p22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM84A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM84A
dbVarFAM84A
ClinVarFAM84A
1000_GenomesFAM84A 
Exome Variant ServerFAM84A
ExAC (Exome Aggregation Consortium)FAM84A (select the gene name)
Genetic variants : HAPMAP151354
Genomic Variants (DGV)FAM84A [DGVbeta]
DECIPHERFAM84A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM84A 
Mutations
ICGC Data PortalFAM84A 
TCGA Data PortalFAM84A 
Broad Tumor PortalFAM84A
OASIS PortalFAM84A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM84A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM84A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM84A
DgiDB (Drug Gene Interaction Database)FAM84A
DoCM (Curated mutations)FAM84A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM84A (select a term)
intoGenFAM84A
Cancer3DFAM84A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611234   
Orphanet
MedgenFAM84A
Genetic Testing Registry FAM84A
NextProtQ96KN4 [Medical]
TSGene151354
GENETestsFAM84A
Target ValidationFAM84A
Huge Navigator FAM84A [HugePedia]
snp3D : Map Gene to Disease151354
BioCentury BCIQFAM84A
ClinGenFAM84A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151354
Chemical/Pharm GKB GenePA142671854
Clinical trialFAM84A
Miscellaneous
canSAR (ICR)FAM84A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM84A
EVEXFAM84A
GoPubMedFAM84A
iHOPFAM84A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:53:07 CEST 2017

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