Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM84B (family with sequence similarity 84 member B)

Identity

Alias_namesfamily with sequence similarity 84
Alias_symbol (synonym)BCMP101
NSE2
Other alias
HGNC (Hugo) FAM84B
LocusID (NCBI) 157638
Atlas_Id 41585
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 126552438 and ends at 126558466 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Prostate tumors: an overview


External links

Nomenclature
HGNC (Hugo)FAM84B   24166
Cards
Entrez_Gene (NCBI)FAM84B  157638  family with sequence similarity 84 member B
AliasesBCMP101; NSE2
GeneCards (Weizmann)FAM84B
Ensembl hg19 (Hinxton)ENSG00000168672 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168672 [Gene_View]  chr8:126552438-126558466 [Contig_View]  FAM84B [Vega]
ICGC DataPortalENSG00000168672
TCGA cBioPortalFAM84B
AceView (NCBI)FAM84B
Genatlas (Paris)FAM84B
WikiGenes157638
SOURCE (Princeton)FAM84B
Genetics Home Reference (NIH)FAM84B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM84B  -     chr8:126552438-126558466 -  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM84B  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblFAM84B - 8q24.21 [CytoView hg19]  FAM84B - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBIFAM84B [Mapview hg19]  FAM84B [Mapview hg38]
OMIM609483   
Gene and transcription
Genbank (Entrez)AJ417849 AK074285 AK292824 BC033717 BC052957
RefSeq transcript (Entrez)NM_174911
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM84B
Cluster EST : UnigeneHs.741352 [ NCBI ]
CGAP (NCI)Hs.741352
Alternative Splicing GalleryENSG00000168672
Gene ExpressionFAM84B [ NCBI-GEO ]   FAM84B [ EBI - ARRAY_EXPRESS ]   FAM84B [ SEEK ]   FAM84B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM84B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157638
GTEX Portal (Tissue expression)FAM84B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KN1
Splice isoforms : SwissVarQ96KN1
PhosPhoSitePlusQ96KN1
Domains : Interpro (EBI)FAM84B    LRAT-like_dom    NLP_P60_dom   
Domain families : Pfam (Sanger)LRAT (PF04970)   
Domain families : Pfam (NCBI)pfam04970   
Conserved Domain (NCBI)FAM84B
DMDM Disease mutations157638
Blocks (Seattle)FAM84B
SuperfamilyQ96KN1
Human Protein AtlasENSG00000168672
Peptide AtlasQ96KN1
HPRD11403
IPIIPI00064666   
Protein Interaction databases
DIP (DOE-UCLA)Q96KN1
IntAct (EBI)Q96KN1
FunCoupENSG00000168672
BioGRIDFAM84B
STRING (EMBL)FAM84B
ZODIACFAM84B
Ontologies - Pathways
QuickGOQ96KN1
Ontology : AmiGOprotein binding  cytoplasm  plasma membrane  
Ontology : EGO-EBIprotein binding  cytoplasm  plasma membrane  
NDEx NetworkFAM84B
Atlas of Cancer Signalling NetworkFAM84B
Wikipedia pathwaysFAM84B
Orthology - Evolution
OrthoDB157638
GeneTree (enSembl)ENSG00000168672
Phylogenetic Trees/Animal Genes : TreeFamFAM84B
HOVERGENQ96KN1
HOGENOMQ96KN1
Homologs : HomoloGeneFAM84B
Homology/Alignments : Family Browser (UCSC)FAM84B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM84B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM84B
dbVarFAM84B
ClinVarFAM84B
1000_GenomesFAM84B 
Exome Variant ServerFAM84B
ExAC (Exome Aggregation Consortium)FAM84B (select the gene name)
Genetic variants : HAPMAP157638
Genomic Variants (DGV)FAM84B [DGVbeta]
DECIPHERFAM84B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM84B 
Mutations
ICGC Data PortalFAM84B 
TCGA Data PortalFAM84B 
Broad Tumor PortalFAM84B
OASIS PortalFAM84B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM84B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM84B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM84B
DgiDB (Drug Gene Interaction Database)FAM84B
DoCM (Curated mutations)FAM84B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM84B (select a term)
intoGenFAM84B
Cancer3DFAM84B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609483   
Orphanet
MedgenFAM84B
Genetic Testing Registry FAM84B
NextProtQ96KN1 [Medical]
TSGene157638
GENETestsFAM84B
Target ValidationFAM84B
Huge Navigator FAM84B [HugePedia]
snp3D : Map Gene to Disease157638
BioCentury BCIQFAM84B
ClinGenFAM84B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157638
Chemical/Pharm GKB GenePA142671855
Clinical trialFAM84B
Miscellaneous
canSAR (ICR)FAM84B (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM84B
EVEXFAM84B
GoPubMedFAM84B
iHOPFAM84B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:33:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.