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FAM86B1 (family with sequence similarity 86 member B1)

Identity

Alias_namesfamily with sequence similarity 86, member B1
Alias_symbol (synonym)MGC16279
Other alias-
HGNC (Hugo) FAM86B1
LocusID (NCBI) 85002
Atlas_Id 63258
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12182104 and ends at 12194115 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM86B1   28268
Cards
Entrez_Gene (NCBI)FAM86B1  85002  family with sequence similarity 86 member B1
Aliases
GeneCards (Weizmann)FAM86B1
Ensembl hg19 (Hinxton)ENSG00000186523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186523 [Gene_View]  chr8:12182104-12194115 [Contig_View]  FAM86B1 [Vega]
ICGC DataPortalENSG00000186523
TCGA cBioPortalFAM86B1
AceView (NCBI)FAM86B1
Genatlas (Paris)FAM86B1
WikiGenes85002
SOURCE (Princeton)FAM86B1
Genetics Home Reference (NIH)FAM86B1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM86B1  -     chr8:12182104-12194115 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM86B1  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblFAM86B1 - 8p23.1 [CytoView hg19]  FAM86B1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM86B1 [Mapview hg19]  FAM86B1 [Mapview hg38]
OMIM616122   
Gene and transcription
Genbank (Entrez)AK098138 AK308439 AK308513 AL529666 BC048297
RefSeq transcript (Entrez)NM_001083537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM86B1
Cluster EST : UnigeneHs.675799 [ NCBI ]
CGAP (NCI)Hs.675799
Alternative Splicing GalleryENSG00000186523
Gene ExpressionFAM86B1 [ NCBI-GEO ]   FAM86B1 [ EBI - ARRAY_EXPRESS ]   FAM86B1 [ SEEK ]   FAM86B1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM86B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85002
GTEX Portal (Tissue expression)FAM86B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7N1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7N1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7N1
Splice isoforms : SwissVarQ8N7N1
PhosPhoSitePlusQ8N7N1
Domains : Interpro (EBI)FAM86    Methyltransf_16    SAM-dependent_MTases   
Domain families : Pfam (Sanger)FAM86 (PF14904)    Methyltransf_16 (PF10294)   
Domain families : Pfam (NCBI)pfam14904    pfam10294   
Conserved Domain (NCBI)FAM86B1
DMDM Disease mutations85002
Blocks (Seattle)FAM86B1
SuperfamilyQ8N7N1
Human Protein AtlasENSG00000186523
Peptide AtlasQ8N7N1
HPRD17515
IPIIPI00845443   IPI00981538   IPI00796809   IPI00982988   IPI00983584   IPI01015824   IPI00976599   IPI00985490   IPI00980368   IPI00975926   IPI00980233   IPI00977971   IPI00982184   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7N1
IntAct (EBI)Q8N7N1
FunCoupENSG00000186523
BioGRIDFAM86B1
STRING (EMBL)FAM86B1
ZODIACFAM86B1
Ontologies - Pathways
QuickGOQ8N7N1
Ontology : AmiGOmethyltransferase activity  methylation  
Ontology : EGO-EBImethyltransferase activity  methylation  
NDEx NetworkFAM86B1
Atlas of Cancer Signalling NetworkFAM86B1
Wikipedia pathwaysFAM86B1
Orthology - Evolution
OrthoDB85002
GeneTree (enSembl)ENSG00000186523
Phylogenetic Trees/Animal Genes : TreeFamFAM86B1
HOVERGENQ8N7N1
HOGENOMQ8N7N1
Homologs : HomoloGeneFAM86B1
Homology/Alignments : Family Browser (UCSC)FAM86B1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM86B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM86B1
dbVarFAM86B1
ClinVarFAM86B1
1000_GenomesFAM86B1 
Exome Variant ServerFAM86B1
ExAC (Exome Aggregation Consortium)FAM86B1 (select the gene name)
Genetic variants : HAPMAP85002
Genomic Variants (DGV)FAM86B1 [DGVbeta]
DECIPHERFAM86B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM86B1 
Mutations
ICGC Data PortalFAM86B1 
TCGA Data PortalFAM86B1 
Broad Tumor PortalFAM86B1
OASIS PortalFAM86B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM86B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM86B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM86B1
DgiDB (Drug Gene Interaction Database)FAM86B1
DoCM (Curated mutations)FAM86B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM86B1 (select a term)
intoGenFAM86B1
Cancer3DFAM86B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616122   
Orphanet
MedgenFAM86B1
Genetic Testing Registry FAM86B1
NextProtQ8N7N1 [Medical]
TSGene85002
GENETestsFAM86B1
Target ValidationFAM86B1
Huge Navigator FAM86B1 [HugePedia]
snp3D : Map Gene to Disease85002
BioCentury BCIQFAM86B1
ClinGenFAM86B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85002
Chemical/Pharm GKB GenePA142671859
Clinical trialFAM86B1
Miscellaneous
canSAR (ICR)FAM86B1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM86B1
EVEXFAM86B1
GoPubMedFAM86B1
iHOPFAM86B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:13 CEST 2017

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