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FAM86C1 (family with sequence similarity 86 member C1)

Identity

Alias_namesFAM86C
family with sequence similarity 86, member C
family with sequence similarity 86, member C1
Alias_symbol (synonym)FLJ10661
FLJ27199
Other alias
HGNC (Hugo) FAM86C1
LocusID (NCBI) 55199
Atlas_Id 63261
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71787511 and ends at 71801234 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM86C1   25561
Cards
Entrez_Gene (NCBI)FAM86C1  55199  family with sequence similarity 86 member C1
AliasesFAM86C
GeneCards (Weizmann)FAM86C1
Ensembl hg19 (Hinxton)ENSG00000158483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158483 [Gene_View]  chr11:71787511-71801234 [Contig_View]  FAM86C1 [Vega]
ICGC DataPortalENSG00000158483
TCGA cBioPortalFAM86C1
AceView (NCBI)FAM86C1
Genatlas (Paris)FAM86C1
WikiGenes55199
SOURCE (Princeton)FAM86C1
Genetics Home Reference (NIH)FAM86C1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM86C1  -     chr11:71787511-71801234 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM86C1  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblFAM86C1 - 11q13.4 [CytoView hg19]  FAM86C1 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIFAM86C1 [Mapview hg19]  FAM86C1 [Mapview hg38]
OMIM616124   
Gene and transcription
Genbank (Entrez)AK001523 AK130709 AK293221 AK311428 AK311518
RefSeq transcript (Entrez)NM_001099653 NM_018172 NM_152563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM86C1
Cluster EST : UnigeneHs.567527 [ NCBI ]
CGAP (NCI)Hs.567527
Alternative Splicing GalleryENSG00000158483
Gene ExpressionFAM86C1 [ NCBI-GEO ]   FAM86C1 [ EBI - ARRAY_EXPRESS ]   FAM86C1 [ SEEK ]   FAM86C1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM86C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55199
GTEX Portal (Tissue expression)FAM86C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVL1
Splice isoforms : SwissVarQ9NVL1
PhosPhoSitePlusQ9NVL1
Domains : Interpro (EBI)FAM86   
Domain families : Pfam (Sanger)FAM86 (PF14904)   
Domain families : Pfam (NCBI)pfam14904   
Conserved Domain (NCBI)FAM86C1
DMDM Disease mutations55199
Blocks (Seattle)FAM86C1
SuperfamilyQ9NVL1
Human Protein AtlasENSG00000158483
Peptide AtlasQ9NVL1
HPRD13337
IPIIPI00018836   IPI00166842   IPI00943338   IPI00968175   IPI00908775   IPI00855789   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVL1
IntAct (EBI)Q9NVL1
FunCoupENSG00000158483
BioGRIDFAM86C1
STRING (EMBL)FAM86C1
ZODIACFAM86C1
Ontologies - Pathways
QuickGOQ9NVL1
Ontology : AmiGOprotein binding  methyltransferase activity  methylation  
Ontology : EGO-EBIprotein binding  methyltransferase activity  methylation  
NDEx NetworkFAM86C1
Atlas of Cancer Signalling NetworkFAM86C1
Wikipedia pathwaysFAM86C1
Orthology - Evolution
OrthoDB55199
GeneTree (enSembl)ENSG00000158483
Phylogenetic Trees/Animal Genes : TreeFamFAM86C1
HOVERGENQ9NVL1
HOGENOMQ9NVL1
Homologs : HomoloGeneFAM86C1
Homology/Alignments : Family Browser (UCSC)FAM86C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM86C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM86C1
dbVarFAM86C1
ClinVarFAM86C1
1000_GenomesFAM86C1 
Exome Variant ServerFAM86C1
ExAC (Exome Aggregation Consortium)FAM86C1 (select the gene name)
Genetic variants : HAPMAP55199
Genomic Variants (DGV)FAM86C1 [DGVbeta]
DECIPHERFAM86C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM86C1 
Mutations
ICGC Data PortalFAM86C1 
TCGA Data PortalFAM86C1 
Broad Tumor PortalFAM86C1
OASIS PortalFAM86C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM86C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM86C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM86C1
DgiDB (Drug Gene Interaction Database)FAM86C1
DoCM (Curated mutations)FAM86C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM86C1 (select a term)
intoGenFAM86C1
Cancer3DFAM86C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616124   
Orphanet
MedgenFAM86C1
Genetic Testing Registry FAM86C1
NextProtQ9NVL1 [Medical]
TSGene55199
GENETestsFAM86C1
Target ValidationFAM86C1
Huge Navigator FAM86C1 [HugePedia]
snp3D : Map Gene to Disease55199
BioCentury BCIQFAM86C1
ClinGenFAM86C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55199
Chemical/Pharm GKB GenePA143485461
Clinical trialFAM86C1
Miscellaneous
canSAR (ICR)FAM86C1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM86C1
EVEXFAM86C1
GoPubMedFAM86C1
iHOPFAM86C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:48 CEST 2017

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