Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM86C2P (family with sequence similarity 86, member A pseudogene)

Identity

Alias_namesfamily with sequence similarity 86, member C2, pseudogene
Other alias-
HGNC (Hugo) FAM86C2P
LocusID (NCBI) 645332
Atlas_Id 63262
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67791767 and ends at 67805336 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM86C2P   42392
Cards
Entrez_Gene (NCBI)FAM86C2P  645332  family with sequence similarity 86, member A pseudogene
Aliases
GeneCards (Weizmann)FAM86C2P
Ensembl hg19 (Hinxton)ENSG00000160172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160172 [Gene_View]  chr11:67791767-67805336 [Contig_View]  FAM86C2P [Vega]
ICGC DataPortalENSG00000160172
TCGA cBioPortalFAM86C2P
AceView (NCBI)FAM86C2P
Genatlas (Paris)FAM86C2P
WikiGenes645332
SOURCE (Princeton)FAM86C2P
Genetics Home Reference (NIH)FAM86C2P
Genomic and cartography
GoldenPath hg38 (UCSC)FAM86C2P  -     chr11:67791767-67805336 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM86C2P  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblFAM86C2P - 11q13.2 [CytoView hg19]  FAM86C2P - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIFAM86C2P [Mapview hg19]  FAM86C2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055771 BC063712 BC110365
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM86C2P
Cluster EST : UnigeneHs.535094 [ NCBI ]
CGAP (NCI)Hs.535094
Alternative Splicing GalleryENSG00000160172
Gene ExpressionFAM86C2P [ NCBI-GEO ]   FAM86C2P [ EBI - ARRAY_EXPRESS ]   FAM86C2P [ SEEK ]   FAM86C2P [ MEM ]
Gene Expression Viewer (FireBrowse)FAM86C2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645332
GTEX Portal (Tissue expression)FAM86C2P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEL3
Splice isoforms : SwissVarA6NEL3
PhosPhoSitePlusA6NEL3
Domains : Interpro (EBI)FAM86   
Domain families : Pfam (Sanger)FAM86 (PF14904)   
Domain families : Pfam (NCBI)pfam14904   
Conserved Domain (NCBI)FAM86C2P
DMDM Disease mutations645332
Blocks (Seattle)FAM86C2P
SuperfamilyA6NEL3
Human Protein AtlasENSG00000160172
Peptide AtlasA6NEL3
IPIIPI00455171   IPI00332754   IPI00878896   
Protein Interaction databases
DIP (DOE-UCLA)A6NEL3
IntAct (EBI)A6NEL3
FunCoupENSG00000160172
BioGRIDFAM86C2P
STRING (EMBL)FAM86C2P
ZODIACFAM86C2P
Ontologies - Pathways
QuickGOA6NEL3
Ontology : AmiGOmethyltransferase activity  methylation  
Ontology : EGO-EBImethyltransferase activity  methylation  
NDEx NetworkFAM86C2P
Atlas of Cancer Signalling NetworkFAM86C2P
Wikipedia pathwaysFAM86C2P
Orthology - Evolution
OrthoDB645332
GeneTree (enSembl)ENSG00000160172
Phylogenetic Trees/Animal Genes : TreeFamFAM86C2P
HOVERGENA6NEL3
HOGENOMA6NEL3
Homologs : HomoloGeneFAM86C2P
Homology/Alignments : Family Browser (UCSC)FAM86C2P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM86C2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM86C2P
dbVarFAM86C2P
ClinVarFAM86C2P
1000_GenomesFAM86C2P 
Exome Variant ServerFAM86C2P
ExAC (Exome Aggregation Consortium)FAM86C2P (select the gene name)
Genetic variants : HAPMAP645332
Genomic Variants (DGV)FAM86C2P [DGVbeta]
DECIPHERFAM86C2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM86C2P 
Mutations
ICGC Data PortalFAM86C2P 
TCGA Data PortalFAM86C2P 
Broad Tumor PortalFAM86C2P
OASIS PortalFAM86C2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM86C2P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM86C2P
DgiDB (Drug Gene Interaction Database)FAM86C2P
DoCM (Curated mutations)FAM86C2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM86C2P (select a term)
intoGenFAM86C2P
Cancer3DFAM86C2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM86C2P
Genetic Testing Registry FAM86C2P
NextProtA6NEL3 [Medical]
TSGene645332
GENETestsFAM86C2P
Target ValidationFAM86C2P
Huge Navigator FAM86C2P [HugePedia]
snp3D : Map Gene to Disease645332
BioCentury BCIQFAM86C2P
ClinGenFAM86C2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645332
Clinical trialFAM86C2P
Miscellaneous
canSAR (ICR)FAM86C2P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM86C2P
EVEXFAM86C2P
GoPubMedFAM86C2P
iHOPFAM86C2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:48:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.