Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM86JP (family with sequence similarity 86, member A pseudogene)

Identity

Alias_namesfamily with sequence similarity 86, member J, pseudogene
Other alias-
HGNC (Hugo) FAM86JP
LocusID (NCBI) 100125556
Atlas_Id 63267
Location 3q21.2  [Link to chromosome band 3q21]
Location_base_pair Starts at 125635444 and ends at 125648867 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM86JP   44097
Cards
Entrez_Gene (NCBI)FAM86JP  100125556  family with sequence similarity 86, member A pseudogene
Aliases
GeneCards (Weizmann)FAM86JP
Ensembl hg19 (Hinxton)ENSG00000171084 [Gene_View]  chr3:125635444-125648867 [Contig_View]  FAM86JP [Vega]
Ensembl hg38 (Hinxton)ENSG00000171084 [Gene_View]  chr3:125635444-125648867 [Contig_View]  FAM86JP [Vega]
ICGC DataPortalENSG00000171084
TCGA cBioPortalFAM86JP
AceView (NCBI)FAM86JP
Genatlas (Paris)FAM86JP
WikiGenes100125556
SOURCE (Princeton)FAM86JP
Genetics Home Reference (NIH)FAM86JP
Genomic and cartography
GoldenPath hg19 (UCSC)FAM86JP  -     chr3:125635444-125648867 +  3q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM86JP  -     3q21.2   [Description]    (hg38-Dec_2013)
EnsemblFAM86JP - 3q21.2 [CytoView hg19]  FAM86JP - 3q21.2 [CytoView hg38]
Mapping of homologs : NCBIFAM86JP [Mapview hg19]  FAM86JP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032772 BC041080 BM781991 DA599453
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)FAM86JP
Cluster EST : UnigeneHs.553949 [ NCBI ]
CGAP (NCI)Hs.553949
Alternative Splicing GalleryENSG00000171084
Gene ExpressionFAM86JP [ NCBI-GEO ]   FAM86JP [ EBI - ARRAY_EXPRESS ]   FAM86JP [ SEEK ]   FAM86JP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM86JP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100125556
GTEX Portal (Tissue expression)FAM86JP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05BU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05BU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05BU3
Splice isoforms : SwissVarQ05BU3
PhosPhoSitePlusQ05BU3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM86JP
DMDM Disease mutations100125556
Blocks (Seattle)FAM86JP
SuperfamilyQ05BU3
Human Protein AtlasENSG00000171084
Peptide AtlasQ05BU3
IPIIPI00807604   IPI00847399   
Protein Interaction databases
DIP (DOE-UCLA)Q05BU3
IntAct (EBI)Q05BU3
FunCoupENSG00000171084
BioGRIDFAM86JP
STRING (EMBL)FAM86JP
ZODIACFAM86JP
Ontologies - Pathways
QuickGOQ05BU3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM86JP
Atlas of Cancer Signalling NetworkFAM86JP
Wikipedia pathwaysFAM86JP
Orthology - Evolution
OrthoDB100125556
GeneTree (enSembl)ENSG00000171084
Phylogenetic Trees/Animal Genes : TreeFamFAM86JP
HOVERGENQ05BU3
HOGENOMQ05BU3
Homologs : HomoloGeneFAM86JP
Homology/Alignments : Family Browser (UCSC)FAM86JP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM86JP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM86JP
dbVarFAM86JP
ClinVarFAM86JP
1000_GenomesFAM86JP 
Exome Variant ServerFAM86JP
ExAC (Exome Aggregation Consortium)FAM86JP (select the gene name)
Genetic variants : HAPMAP100125556
Genomic Variants (DGV)FAM86JP [DGVbeta]
DECIPHER (Syndromes)3:125635444-125648867  ENSG00000171084
CONAN: Copy Number AnalysisFAM86JP 
Mutations
ICGC Data PortalFAM86JP 
TCGA Data PortalFAM86JP 
Broad Tumor PortalFAM86JP
OASIS PortalFAM86JP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM86JP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM86JP
DgiDB (Drug Gene Interaction Database)FAM86JP
DoCM (Curated mutations)FAM86JP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM86JP (select a term)
intoGenFAM86JP
Cancer3DFAM86JP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM86JP
Genetic Testing Registry FAM86JP
NextProtQ05BU3 [Medical]
TSGene100125556
GENETestsFAM86JP
Huge Navigator FAM86JP [HugePedia]
snp3D : Map Gene to Disease100125556
BioCentury BCIQFAM86JP
ClinGenFAM86JP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100125556
Clinical trialFAM86JP
Miscellaneous
canSAR (ICR)FAM86JP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM86JP
EVEXFAM86JP
GoPubMedFAM86JP
iHOPFAM86JP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:24 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.