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FAM87A (family with sequence similarity 87 member A)

Identity

Alias_namesfamily with sequence similarity 87, member A
Other alias-
HGNC (Hugo) FAM87A
LocusID (NCBI) 157693
Atlas_Id 63268
Location 8p23.3  [Link to chromosome band 8p23]
Location_base_pair Starts at 375931 and ends at 383174 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM87A   27233
Cards
Entrez_Gene (NCBI)FAM87A  157693  family with sequence similarity 87 member A
Aliases
GeneCards (Weizmann)FAM87A
Ensembl hg19 (Hinxton)ENSG00000182366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182366 [Gene_View]  chr8:375931-383174 [Contig_View]  FAM87A [Vega]
ICGC DataPortalENSG00000182366
TCGA cBioPortalFAM87A
AceView (NCBI)FAM87A
Genatlas (Paris)FAM87A
WikiGenes157693
SOURCE (Princeton)FAM87A
Genetics Home Reference (NIH)FAM87A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM87A  -     chr8:375931-383174 -  8p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM87A  -     8p23.3   [Description]    (hg19-Feb_2009)
EnsemblFAM87A - 8p23.3 [CytoView hg19]  FAM87A - 8p23.3 [CytoView hg38]
Mapping of homologs : NCBIFAM87A [Mapview hg19]  FAM87A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037297 BC118644
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM87A
Cluster EST : UnigeneHs.591390 [ NCBI ]
CGAP (NCI)Hs.591390
Alternative Splicing GalleryENSG00000182366
Gene ExpressionFAM87A [ NCBI-GEO ]   FAM87A [ EBI - ARRAY_EXPRESS ]   FAM87A [ SEEK ]   FAM87A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM87A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157693
GTEX Portal (Tissue expression)FAM87A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7U9
Splice isoforms : SwissVarP0C7U9
PhosPhoSitePlusP0C7U9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM87A
DMDM Disease mutations157693
Blocks (Seattle)FAM87A
SuperfamilyP0C7U9
Human Protein AtlasENSG00000182366
Peptide AtlasP0C7U9
IPIIPI00477222   
Protein Interaction databases
DIP (DOE-UCLA)P0C7U9
IntAct (EBI)P0C7U9
FunCoupENSG00000182366
BioGRIDFAM87A
STRING (EMBL)FAM87A
ZODIACFAM87A
Ontologies - Pathways
QuickGOP0C7U9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM87A
Atlas of Cancer Signalling NetworkFAM87A
Wikipedia pathwaysFAM87A
Orthology - Evolution
OrthoDB157693
GeneTree (enSembl)ENSG00000182366
Phylogenetic Trees/Animal Genes : TreeFamFAM87A
HOVERGENP0C7U9
HOGENOMP0C7U9
Homologs : HomoloGeneFAM87A
Homology/Alignments : Family Browser (UCSC)FAM87A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM87A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM87A
dbVarFAM87A
ClinVarFAM87A
1000_GenomesFAM87A 
Exome Variant ServerFAM87A
ExAC (Exome Aggregation Consortium)FAM87A (select the gene name)
Genetic variants : HAPMAP157693
Genomic Variants (DGV)FAM87A [DGVbeta]
DECIPHERFAM87A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM87A 
Mutations
ICGC Data PortalFAM87A 
TCGA Data PortalFAM87A 
Broad Tumor PortalFAM87A
OASIS PortalFAM87A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM87A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM87A
DgiDB (Drug Gene Interaction Database)FAM87A
DoCM (Curated mutations)FAM87A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM87A (select a term)
intoGenFAM87A
Cancer3DFAM87A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM87A
Genetic Testing Registry FAM87A
NextProtP0C7U9 [Medical]
TSGene157693
GENETestsFAM87A
Target ValidationFAM87A
Huge Navigator FAM87A [HugePedia]
snp3D : Map Gene to Disease157693
BioCentury BCIQFAM87A
ClinGenFAM87A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157693
Chemical/Pharm GKB GenePA142671792
Clinical trialFAM87A
Miscellaneous
canSAR (ICR)FAM87A (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM87A
EVEXFAM87A
GoPubMedFAM87A
iHOPFAM87A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:50 CEST 2017

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