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FAM89A (family with sequence similarity 89 member A)

Identity

Alias_namesC1orf153
chromosome 1 open reading frame 153
family with sequence similarity 89, member A
Alias_symbol (synonym)MGC15887
Other alias
HGNC (Hugo) FAM89A
LocusID (NCBI) 375061
Atlas_Id 63270
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231018958 and ends at 231040249 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM89A   25057
Cards
Entrez_Gene (NCBI)FAM89A  375061  family with sequence similarity 89 member A
AliasesC1orf153
GeneCards (Weizmann)FAM89A
Ensembl hg19 (Hinxton)ENSG00000182118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182118 [Gene_View]  chr1:231018958-231040249 [Contig_View]  FAM89A [Vega]
ICGC DataPortalENSG00000182118
TCGA cBioPortalFAM89A
AceView (NCBI)FAM89A
Genatlas (Paris)FAM89A
WikiGenes375061
SOURCE (Princeton)FAM89A
Genetics Home Reference (NIH)FAM89A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM89A  -     chr1:231018958-231040249 -  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM89A  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblFAM89A - 1q42.2 [CytoView hg19]  FAM89A - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBIFAM89A [Mapview hg19]  FAM89A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009447 CD365446
RefSeq transcript (Entrez)NM_198552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM89A
Cluster EST : UnigeneHs.38516 [ NCBI ]
CGAP (NCI)Hs.38516
Alternative Splicing GalleryENSG00000182118
Gene ExpressionFAM89A [ NCBI-GEO ]   FAM89A [ EBI - ARRAY_EXPRESS ]   FAM89A [ SEEK ]   FAM89A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM89A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375061
GTEX Portal (Tissue expression)FAM89A
Human Protein AtlasENSG00000182118-FAM89A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GI7
Splice isoforms : SwissVarQ96GI7
PhosPhoSitePlusQ96GI7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM89A
DMDM Disease mutations375061
Blocks (Seattle)FAM89A
SuperfamilyQ96GI7
Human Protein Atlas [tissue]ENSG00000182118-FAM89A [tissue]
Peptide AtlasQ96GI7
HPRD11845
IPIIPI00746669   
Protein Interaction databases
DIP (DOE-UCLA)Q96GI7
IntAct (EBI)Q96GI7
FunCoupENSG00000182118
BioGRIDFAM89A
STRING (EMBL)FAM89A
ZODIACFAM89A
Ontologies - Pathways
QuickGOQ96GI7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM89A
Atlas of Cancer Signalling NetworkFAM89A
Wikipedia pathwaysFAM89A
Orthology - Evolution
OrthoDB375061
GeneTree (enSembl)ENSG00000182118
Phylogenetic Trees/Animal Genes : TreeFamFAM89A
HOVERGENQ96GI7
HOGENOMQ96GI7
Homologs : HomoloGeneFAM89A
Homology/Alignments : Family Browser (UCSC)FAM89A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM89A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM89A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM89A
dbVarFAM89A
ClinVarFAM89A
1000_GenomesFAM89A 
Exome Variant ServerFAM89A
ExAC (Exome Aggregation Consortium)ENSG00000182118
GNOMAD BrowserENSG00000182118
Genetic variants : HAPMAP375061
Genomic Variants (DGV)FAM89A [DGVbeta]
DECIPHERFAM89A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM89A 
Mutations
ICGC Data PortalFAM89A 
TCGA Data PortalFAM89A 
Broad Tumor PortalFAM89A
OASIS PortalFAM89A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM89A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM89A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM89A
DgiDB (Drug Gene Interaction Database)FAM89A
DoCM (Curated mutations)FAM89A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM89A (select a term)
intoGenFAM89A
Cancer3DFAM89A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM89A
MedgenFAM89A
Genetic Testing Registry FAM89A
NextProtQ96GI7 [Medical]
TSGene375061
GENETestsFAM89A
Target ValidationFAM89A
Huge Navigator FAM89A [HugePedia]
snp3D : Map Gene to Disease375061
BioCentury BCIQFAM89A
ClinGenFAM89A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375061
Chemical/Pharm GKB GenePA142671794
Clinical trialFAM89A
Miscellaneous
canSAR (ICR)FAM89A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM89A
EVEXFAM89A
GoPubMedFAM89A
iHOPFAM89A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:08 CET 2017

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