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FAM8A1 (family with sequence similarity 8 member A1)

Identity

Alias_namesfamily with sequence similarity 8, member A1
Alias_symbol (synonym)AHCP
Other alias
HGNC (Hugo) FAM8A1
LocusID (NCBI) 51439
Atlas_Id 63271
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 17600287 and ends at 17611719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM8A1   16372
Cards
Entrez_Gene (NCBI)FAM8A1  51439  family with sequence similarity 8 member A1
AliasesAHCP
GeneCards (Weizmann)FAM8A1
Ensembl hg19 (Hinxton)ENSG00000137414 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137414 [Gene_View]  ENSG00000137414 [Sequence]  chr6:17600287-17611719 [Contig_View]  FAM8A1 [Vega]
ICGC DataPortalENSG00000137414
TCGA cBioPortalFAM8A1
AceView (NCBI)FAM8A1
Genatlas (Paris)FAM8A1
WikiGenes51439
SOURCE (Princeton)FAM8A1
Genetics Home Reference (NIH)FAM8A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM8A1  -     chr6:17600287-17611719 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM8A1  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblFAM8A1 - 6p22.3 [CytoView hg19]  FAM8A1 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIFAM8A1 [Mapview hg19]  FAM8A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086479 AF097027 AK074301 AK296393 AK307681
RefSeq transcript (Entrez)NM_016255
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM8A1
Cluster EST : UnigeneHs.95260 [ NCBI ]
CGAP (NCI)Hs.95260
Alternative Splicing GalleryENSG00000137414
Gene ExpressionFAM8A1 [ NCBI-GEO ]   FAM8A1 [ EBI - ARRAY_EXPRESS ]   FAM8A1 [ SEEK ]   FAM8A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM8A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51439
GTEX Portal (Tissue expression)FAM8A1
Human Protein AtlasENSG00000137414-FAM8A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBU6
Splice isoforms : SwissVarQ9UBU6
PhosPhoSitePlusQ9UBU6
Domains : Interpro (EBI)RDD   
Domain families : Pfam (Sanger)RDD (PF06271)   
Domain families : Pfam (NCBI)pfam06271   
Conserved Domain (NCBI)FAM8A1
DMDM Disease mutations51439
Blocks (Seattle)FAM8A1
SuperfamilyQ9UBU6
Human Protein Atlas [tissue]ENSG00000137414-FAM8A1 [tissue]
Peptide AtlasQ9UBU6
HPRD13316
IPIIPI00008285   IPI01015417   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBU6
IntAct (EBI)Q9UBU6
FunCoupENSG00000137414
BioGRIDFAM8A1
STRING (EMBL)FAM8A1
ZODIACFAM8A1
Ontologies - Pathways
QuickGOQ9UBU6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM8A1
Atlas of Cancer Signalling NetworkFAM8A1
Wikipedia pathwaysFAM8A1
Orthology - Evolution
OrthoDB51439
GeneTree (enSembl)ENSG00000137414
Phylogenetic Trees/Animal Genes : TreeFamFAM8A1
HOVERGENQ9UBU6
HOGENOMQ9UBU6
Homologs : HomoloGeneFAM8A1
Homology/Alignments : Family Browser (UCSC)FAM8A1
Gene fusions - Rearrangements
Fusion : QuiverFAM8A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM8A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM8A1
dbVarFAM8A1
ClinVarFAM8A1
1000_GenomesFAM8A1 
Exome Variant ServerFAM8A1
ExAC (Exome Aggregation Consortium)ENSG00000137414
GNOMAD BrowserENSG00000137414
Varsome BrowserFAM8A1
Genetic variants : HAPMAP51439
Genomic Variants (DGV)FAM8A1 [DGVbeta]
DECIPHERFAM8A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM8A1 
Mutations
ICGC Data PortalFAM8A1 
TCGA Data PortalFAM8A1 
Broad Tumor PortalFAM8A1
OASIS PortalFAM8A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM8A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM8A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM8A1
DgiDB (Drug Gene Interaction Database)FAM8A1
DoCM (Curated mutations)FAM8A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM8A1 (select a term)
intoGenFAM8A1
Cancer3DFAM8A1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM8A1
MedgenFAM8A1
Genetic Testing Registry FAM8A1
NextProtQ9UBU6 [Medical]
TSGene51439
GENETestsFAM8A1
Target ValidationFAM8A1
Huge Navigator FAM8A1 [HugePedia]
snp3D : Map Gene to Disease51439
BioCentury BCIQFAM8A1
ClinGenFAM8A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51439
Chemical/Pharm GKB GenePA27986
Clinical trialFAM8A1
Miscellaneous
canSAR (ICR)FAM8A1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM8A1
EVEXFAM8A1
GoPubMedFAM8A1
iHOPFAM8A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:38 CEST 2018

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