Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM90A1 (family with sequence similarity 90 member A1)

Identity

Alias_namesfamily with sequence similarity 90, member A1
Alias_symbol (synonym)FLJ10408
Other alias-
HGNC (Hugo) FAM90A1
LocusID (NCBI) 55138
Atlas_Id 63272
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8221260 and ends at 8227618 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM90A1   25526
Cards
Entrez_Gene (NCBI)FAM90A1  55138  family with sequence similarity 90 member A1
Aliases
GeneCards (Weizmann)FAM90A1
Ensembl hg19 (Hinxton)ENSG00000171847 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171847 [Gene_View]  chr12:8221260-8227618 [Contig_View]  FAM90A1 [Vega]
ICGC DataPortalENSG00000171847
TCGA cBioPortalFAM90A1
AceView (NCBI)FAM90A1
Genatlas (Paris)FAM90A1
WikiGenes55138
SOURCE (Princeton)FAM90A1
Genetics Home Reference (NIH)FAM90A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM90A1  -     chr12:8221260-8227618 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM90A1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblFAM90A1 - 12p13.31 [CytoView hg19]  FAM90A1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIFAM90A1 [Mapview hg19]  FAM90A1 [Mapview hg38]
OMIM613041   
Gene and transcription
Genbank (Entrez)AK001270 BC042608 DA088850 JF432402
RefSeq transcript (Entrez)NM_001319982 NM_018088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM90A1
Cluster EST : UnigeneHs.196086 [ NCBI ]
CGAP (NCI)Hs.196086
Alternative Splicing GalleryENSG00000171847
Gene ExpressionFAM90A1 [ NCBI-GEO ]   FAM90A1 [ EBI - ARRAY_EXPRESS ]   FAM90A1 [ SEEK ]   FAM90A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM90A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55138
GTEX Portal (Tissue expression)FAM90A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YD7
Splice isoforms : SwissVarQ86YD7
PhosPhoSitePlusQ86YD7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM90A1
DMDM Disease mutations55138
Blocks (Seattle)FAM90A1
SuperfamilyQ86YD7
Human Protein AtlasENSG00000171847
Peptide AtlasQ86YD7
HPRD07672
IPIIPI00018177   IPI01014275   
Protein Interaction databases
DIP (DOE-UCLA)Q86YD7
IntAct (EBI)Q86YD7
FunCoupENSG00000171847
BioGRIDFAM90A1
STRING (EMBL)FAM90A1
ZODIACFAM90A1
Ontologies - Pathways
QuickGOQ86YD7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM90A1
Atlas of Cancer Signalling NetworkFAM90A1
Wikipedia pathwaysFAM90A1
Orthology - Evolution
OrthoDB55138
GeneTree (enSembl)ENSG00000171847
Phylogenetic Trees/Animal Genes : TreeFamFAM90A1
HOVERGENQ86YD7
HOGENOMQ86YD7
Homologs : HomoloGeneFAM90A1
Homology/Alignments : Family Browser (UCSC)FAM90A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM90A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM90A1
dbVarFAM90A1
ClinVarFAM90A1
1000_GenomesFAM90A1 
Exome Variant ServerFAM90A1
ExAC (Exome Aggregation Consortium)FAM90A1 (select the gene name)
Genetic variants : HAPMAP55138
Genomic Variants (DGV)FAM90A1 [DGVbeta]
DECIPHERFAM90A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM90A1 
Mutations
ICGC Data PortalFAM90A1 
TCGA Data PortalFAM90A1 
Broad Tumor PortalFAM90A1
OASIS PortalFAM90A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM90A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM90A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM90A1
DgiDB (Drug Gene Interaction Database)FAM90A1
DoCM (Curated mutations)FAM90A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM90A1 (select a term)
intoGenFAM90A1
Cancer3DFAM90A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613041   
Orphanet
MedgenFAM90A1
Genetic Testing Registry FAM90A1
NextProtQ86YD7 [Medical]
TSGene55138
GENETestsFAM90A1
Target ValidationFAM90A1
Huge Navigator FAM90A1 [HugePedia]
snp3D : Map Gene to Disease55138
BioCentury BCIQFAM90A1
ClinGenFAM90A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55138
Chemical/Pharm GKB GenePA142671796
Clinical trialFAM90A1
Miscellaneous
canSAR (ICR)FAM90A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM90A1
EVEXFAM90A1
GoPubMedFAM90A1
iHOPFAM90A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:08:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.