Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM90A10P (putative protein FAM90A10)

Identity

Alias_namesFAM90A10
family with sequence similarity 90, member A10
family with sequence similarity 90, member A10, pseudogene
Other alias
HGNC (Hugo) FAM90A10P
LocusID (NCBI) 441328
Atlas_Id 78070
Location 8p23.1  [Link to chromosome band 8p23]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM90A10P   32258
Cards
Entrez_Gene (NCBI)FAM90A10P  441328  putative protein FAM90A10
AliasesFAM90A10
GeneCards (Weizmann)FAM90A10P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  FAM90A10P [Vega]
TCGA cBioPortalFAM90A10P
AceView (NCBI)FAM90A10P
Genatlas (Paris)FAM90A10P
WikiGenes441328
SOURCE (Princeton)FAM90A10P
Genetics Home Reference (NIH)FAM90A10P
Genomic and cartography
GoldenPath hg38 (UCSC)FAM90A10P  -  
GoldenPath hg19 (UCSC)FAM90A10P  -  
EnsemblFAM90A10P - [CytoView hg19]  FAM90A10P - [CytoView hg38]
Mapping of homologs : NCBIFAM90A10P [Mapview hg19]  FAM90A10P [Mapview hg38]
OMIM613047   
Gene and transcription
Genbank (Entrez)DC395395
RefSeq transcript (Entrez)NM_001164447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM90A10P
Cluster EST : UnigeneHs.694406 [ NCBI ]
CGAP (NCI)Hs.694406
Gene ExpressionFAM90A10P [ NCBI-GEO ]   FAM90A10P [ EBI - ARRAY_EXPRESS ]   FAM90A10P [ SEEK ]   FAM90A10P [ MEM ]
Gene Expression Viewer (FireBrowse)FAM90A10P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441328
GTEX Portal (Tissue expression)FAM90A10P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDY2
Splice isoforms : SwissVarA6NDY2
PhosPhoSitePlusA6NDY2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM90A10P
DMDM Disease mutations441328
Blocks (Seattle)FAM90A10P
SuperfamilyA6NDY2
Peptide AtlasA6NDY2
IPIIPI00455824   
Protein Interaction databases
DIP (DOE-UCLA)A6NDY2
IntAct (EBI)A6NDY2
BioGRIDFAM90A10P
STRING (EMBL)FAM90A10P
ZODIACFAM90A10P
Ontologies - Pathways
QuickGOA6NDY2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM90A10P
Atlas of Cancer Signalling NetworkFAM90A10P
Wikipedia pathwaysFAM90A10P
Orthology - Evolution
OrthoDB441328
Phylogenetic Trees/Animal Genes : TreeFamFAM90A10P
HOVERGENA6NDY2
HOGENOMA6NDY2
Homologs : HomoloGeneFAM90A10P
Homology/Alignments : Family Browser (UCSC)FAM90A10P
Gene fusions - Rearrangements
Tumor Fusion PortalFAM90A10P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM90A10P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM90A10P
dbVarFAM90A10P
ClinVarFAM90A10P
1000_GenomesFAM90A10P 
Exome Variant ServerFAM90A10P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP441328
Genomic Variants (DGV)FAM90A10P [DGVbeta]
DECIPHERFAM90A10P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM90A10P 
Mutations
ICGC Data PortalFAM90A10P 
TCGA Data PortalFAM90A10P 
Broad Tumor PortalFAM90A10P
OASIS PortalFAM90A10P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM90A10P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM90A10P
DgiDB (Drug Gene Interaction Database)FAM90A10P
DoCM (Curated mutations)FAM90A10P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM90A10P (select a term)
intoGenFAM90A10P
Cancer3DFAM90A10P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613047   
Orphanet
DisGeNETFAM90A10P
MedgenFAM90A10P
Genetic Testing Registry FAM90A10P
NextProtA6NDY2 [Medical]
TSGene441328
GENETestsFAM90A10P
Target ValidationFAM90A10P
Huge Navigator FAM90A10P [HugePedia]
snp3D : Map Gene to Disease441328
BioCentury BCIQFAM90A10P
ClinGenFAM90A10P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441328
Chemical/Pharm GKB GenePA142671805
Clinical trialFAM90A10P
Miscellaneous
canSAR (ICR)FAM90A10P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM90A10P
EVEXFAM90A10P
GoPubMedFAM90A10P
iHOPFAM90A10P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:10 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.