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FAM90A25P (family with sequence similarity 90 member A25, pseudogene)

Identity

Alias_namesfamily with sequence similarity 90, member A25, pseudogene
Other alias-
HGNC (Hugo) FAM90A25P
LocusID (NCBI) 389633
Atlas_Id 63273
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12414521 and ends at 12418032 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM90A25P   32246
Cards
Entrez_Gene (NCBI)FAM90A25P  389633  family with sequence similarity 90 member A25, pseudogene
Aliases
GeneCards (Weizmann)FAM90A25P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:12414521-12418032 [Contig_View]  FAM90A25P [Vega]
TCGA cBioPortalFAM90A25P
AceView (NCBI)FAM90A25P
Genatlas (Paris)FAM90A25P
WikiGenes389633
SOURCE (Princeton)FAM90A25P
Genetics Home Reference (NIH)FAM90A25P
Genomic and cartography
GoldenPath hg38 (UCSC)FAM90A25P  -     chr8:12414521-12418032 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM90A25P  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblFAM90A25P - 8p23.1 [CytoView hg19]  FAM90A25P - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM90A25P [Mapview hg19]  FAM90A25P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832996
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM90A25P
Cluster EST : UnigeneHs.650464 [ NCBI ]
CGAP (NCI)Hs.650464
Gene ExpressionFAM90A25P [ NCBI-GEO ]   FAM90A25P [ EBI - ARRAY_EXPRESS ]   FAM90A25P [ SEEK ]   FAM90A25P [ MEM ]
Gene Expression Viewer (FireBrowse)FAM90A25P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389633
GTEX Portal (Tissue expression)FAM90A25P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ658T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ658T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ658T7
Splice isoforms : SwissVarQ658T7
PhosPhoSitePlusQ658T7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM90A25P
DMDM Disease mutations389633
Blocks (Seattle)FAM90A25P
SuperfamilyQ658T7
Peptide AtlasQ658T7
IPIIPI00900365   IPI00186204   
Protein Interaction databases
DIP (DOE-UCLA)Q658T7
IntAct (EBI)Q658T7
BioGRIDFAM90A25P
STRING (EMBL)FAM90A25P
ZODIACFAM90A25P
Ontologies - Pathways
QuickGOQ658T7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM90A25P
Atlas of Cancer Signalling NetworkFAM90A25P
Wikipedia pathwaysFAM90A25P
Orthology - Evolution
OrthoDB389633
Phylogenetic Trees/Animal Genes : TreeFamFAM90A25P
HOVERGENQ658T7
HOGENOMQ658T7
Homologs : HomoloGeneFAM90A25P
Homology/Alignments : Family Browser (UCSC)FAM90A25P
Gene fusions - Rearrangements
Tumor Fusion PortalFAM90A25P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM90A25P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM90A25P
dbVarFAM90A25P
ClinVarFAM90A25P
1000_GenomesFAM90A25P 
Exome Variant ServerFAM90A25P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP389633
Genomic Variants (DGV)FAM90A25P [DGVbeta]
DECIPHERFAM90A25P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM90A25P 
Mutations
ICGC Data PortalFAM90A25P 
TCGA Data PortalFAM90A25P 
Broad Tumor PortalFAM90A25P
OASIS PortalFAM90A25P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM90A25P
BioMutasearch FAM90A25P
DgiDB (Drug Gene Interaction Database)FAM90A25P
DoCM (Curated mutations)FAM90A25P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM90A25P (select a term)
intoGenFAM90A25P
Cancer3DFAM90A25P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM90A25P
MedgenFAM90A25P
Genetic Testing Registry FAM90A25P
NextProtQ658T7 [Medical]
TSGene389633
GENETestsFAM90A25P
Target ValidationFAM90A25P
Huge Navigator FAM90A25P [HugePedia]
snp3D : Map Gene to Disease389633
BioCentury BCIQFAM90A25P
ClinGenFAM90A25P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389633
Clinical trialFAM90A25P
Miscellaneous
canSAR (ICR)FAM90A25P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM90A25P
EVEXFAM90A25P
GoPubMedFAM90A25P
iHOPFAM90A25P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:11 CET 2017

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