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FAM90A7P (putative protein FAM90A7)

Identity

Alias_namesFAM90A7
family with sequence similarity 90, member A7
family with sequence similarity 90, member A7, pseudogene
Other alias
HGNC (Hugo) FAM90A7P
LocusID (NCBI) 441317
Atlas_Id 63275
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7421408 and ends at 7431920 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM90A7P   32255
Cards
Entrez_Gene (NCBI)FAM90A7P  441317  putative protein FAM90A7
AliasesFAM90A7
GeneCards (Weizmann)FAM90A7P
Ensembl hg19 (Hinxton) [Gene_View]  chr8:7421408-7431920 [Contig_View]  FAM90A7P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:7421408-7431920 [Contig_View]  FAM90A7P [Vega]
TCGA cBioPortalFAM90A7P
AceView (NCBI)FAM90A7P
Genatlas (Paris)FAM90A7P
WikiGenes441317
SOURCE (Princeton)FAM90A7P
Genetics Home Reference (NIH)FAM90A7P
Genomic and cartography
GoldenPath hg19 (UCSC)FAM90A7P  -     chr8:7421408-7431920 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM90A7P  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblFAM90A7P - 8p23.1 [CytoView hg19]  FAM90A7P - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM90A7P [Mapview hg19]  FAM90A7P [Mapview hg38]
OMIM613044   
Gene and transcription
Genbank (Entrez)AK301810
RefSeq transcript (Entrez)NM_001136572
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_023736 NT_187570 NW_004929335
Consensus coding sequences : CCDS (NCBI)FAM90A7P
Cluster EST : UnigeneHs.715411 [ NCBI ]
CGAP (NCI)Hs.715411
Gene ExpressionFAM90A7P [ NCBI-GEO ]   FAM90A7P [ EBI - ARRAY_EXPRESS ]   FAM90A7P [ SEEK ]   FAM90A7P [ MEM ]
Gene Expression Viewer (FireBrowse)FAM90A7P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441317
GTEX Portal (Tissue expression)FAM90A7P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKC0
Splice isoforms : SwissVarA6NKC0
PhosPhoSitePlusA6NKC0
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)FAM90A7P
DMDM Disease mutations441317
Blocks (Seattle)FAM90A7P
SuperfamilyA6NKC0
Peptide AtlasA6NKC0
IPIIPI00853349   
Protein Interaction databases
DIP (DOE-UCLA)A6NKC0
IntAct (EBI)A6NKC0
BioGRIDFAM90A7P
STRING (EMBL)FAM90A7P
ZODIACFAM90A7P
Ontologies - Pathways
QuickGOA6NKC0
Ontology : AmiGOnucleic acid binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  
NDEx NetworkFAM90A7P
Atlas of Cancer Signalling NetworkFAM90A7P
Wikipedia pathwaysFAM90A7P
Orthology - Evolution
OrthoDB441317
Phylogenetic Trees/Animal Genes : TreeFamFAM90A7P
HOVERGENA6NKC0
HOGENOMA6NKC0
Homologs : HomoloGeneFAM90A7P
Homology/Alignments : Family Browser (UCSC)FAM90A7P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM90A7P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM90A7P
dbVarFAM90A7P
ClinVarFAM90A7P
1000_GenomesFAM90A7P 
Exome Variant ServerFAM90A7P
ExAC (Exome Aggregation Consortium)FAM90A7P (select the gene name)
Genetic variants : HAPMAP441317
Genomic Variants (DGV)FAM90A7P [DGVbeta]
DECIPHER (Syndromes)8:7421408-7431920  
CONAN: Copy Number AnalysisFAM90A7P 
Mutations
ICGC Data PortalFAM90A7P 
TCGA Data PortalFAM90A7P 
Broad Tumor PortalFAM90A7P
OASIS PortalFAM90A7P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM90A7P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM90A7P
DgiDB (Drug Gene Interaction Database)FAM90A7P
DoCM (Curated mutations)FAM90A7P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM90A7P (select a term)
intoGenFAM90A7P
Cancer3DFAM90A7P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613044   
Orphanet
MedgenFAM90A7P
Genetic Testing Registry FAM90A7P
NextProtA6NKC0 [Medical]
TSGene441317
GENETestsFAM90A7P
Huge Navigator FAM90A7P [HugePedia]
snp3D : Map Gene to Disease441317
BioCentury BCIQFAM90A7P
ClinGenFAM90A7P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441317
Chemical/Pharm GKB GenePA142671802
Clinical trialFAM90A7P
Miscellaneous
canSAR (ICR)FAM90A7P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM90A7P
EVEXFAM90A7P
GoPubMedFAM90A7P
iHOPFAM90A7P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:27 CET 2017

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