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FAM96A (family with sequence similarity 96 member A)

Identity

Alias_namesfamily with sequence similarity 96
Alias_symbol (synonym)FLJ22875
CIA2A
Other alias-
HGNC (Hugo) FAM96A
LocusID (NCBI) 84191
Atlas_Id 55416
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64364758 and ends at 64386207 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM96A (15q22.31) / EIF4G2 (11p15.3)FAM96A (15q22.31) / FAM96A (15q22.31)FAM96A (15q22.31) / MRPL52 (14q11.2)
FAM96A (15q22.31) / PRKCB (16p12.2)FAM96A (15q22.31) / SNED1 (2q37.3)FAM96A (15q22.31) / SNX1 (15q22.31)
FAM96A (15q22.31) / STIM1 (11p15.4)HERC1 (15q22.31) / FAM96A (15q22.31)HNRNPA2B1 (7p15.2) / FAM96A (15q22.31)
SNX1 (15q22.31) / FAM96A (15q22.31)ZC3H13 (13q14.13) / FAM96A (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM96A   26235
Cards
Entrez_Gene (NCBI)FAM96A  84191  family with sequence similarity 96 member A
Aliases
GeneCards (Weizmann)FAM96A
Ensembl hg19 (Hinxton)ENSG00000166797 [Gene_View]  chr15:64364758-64386207 [Contig_View]  FAM96A [Vega]
Ensembl hg38 (Hinxton)ENSG00000166797 [Gene_View]  chr15:64364758-64386207 [Contig_View]  FAM96A [Vega]
ICGC DataPortalENSG00000166797
TCGA cBioPortalFAM96A
AceView (NCBI)FAM96A
Genatlas (Paris)FAM96A
WikiGenes84191
SOURCE (Princeton)FAM96A
Genetics Home Reference (NIH)FAM96A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM96A  -     chr15:64364758-64386207 -  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM96A  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblFAM96A - 15q22.31 [CytoView hg19]  FAM96A - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIFAM96A [Mapview hg19]  FAM96A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA809560 AK304202 AK312171 BC008865 BM706342
RefSeq transcript (Entrez)NM_001014812 NM_001289108 NM_032231
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)FAM96A
Cluster EST : UnigeneHs.439548 [ NCBI ]
CGAP (NCI)Hs.439548
Alternative Splicing GalleryENSG00000166797
Gene ExpressionFAM96A [ NCBI-GEO ]   FAM96A [ EBI - ARRAY_EXPRESS ]   FAM96A [ SEEK ]   FAM96A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM96A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84191
GTEX Portal (Tissue expression)FAM96A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5X1
Splice isoforms : SwissVarQ9H5X1
PhosPhoSitePlusQ9H5X1
Domains : Interpro (EBI)DUF59   
Domain families : Pfam (Sanger)DUF59 (PF01883)   
Domain families : Pfam (NCBI)pfam01883   
Conserved Domain (NCBI)FAM96A
DMDM Disease mutations84191
Blocks (Seattle)FAM96A
PDB (SRS)2M5H    3UX2    3UX3   
PDB (PDBSum)2M5H    3UX2    3UX3   
PDB (IMB)2M5H    3UX2    3UX3   
PDB (RSDB)2M5H    3UX2    3UX3   
Structural Biology KnowledgeBase2M5H    3UX2    3UX3   
SCOP (Structural Classification of Proteins)2M5H    3UX2    3UX3   
CATH (Classification of proteins structures)2M5H    3UX2    3UX3   
SuperfamilyQ9H5X1
Human Protein AtlasENSG00000166797
Peptide AtlasQ9H5X1
HPRD08010
IPIIPI00030985   IPI00556162   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5X1
IntAct (EBI)Q9H5X1
FunCoupENSG00000166797
BioGRIDFAM96A
STRING (EMBL)FAM96A
ZODIACFAM96A
Ontologies - Pathways
QuickGOQ9H5X1
Ontology : AmiGOmolecular_function  protein binding  cellular_component  nucleus  nucleus  nucleoplasm  cytoplasm  cytoplasm  chromosome segregation  biological_process  iron-sulfur cluster assembly  metal ion binding  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  nucleus  nucleus  nucleoplasm  cytoplasm  cytoplasm  chromosome segregation  biological_process  iron-sulfur cluster assembly  metal ion binding  
NDEx NetworkFAM96A
Atlas of Cancer Signalling NetworkFAM96A
Wikipedia pathwaysFAM96A
Orthology - Evolution
OrthoDB84191
GeneTree (enSembl)ENSG00000166797
Phylogenetic Trees/Animal Genes : TreeFamFAM96A
HOVERGENQ9H5X1
HOGENOMQ9H5X1
Homologs : HomoloGeneFAM96A
Homology/Alignments : Family Browser (UCSC)FAM96A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM96A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM96A
dbVarFAM96A
ClinVarFAM96A
1000_GenomesFAM96A 
Exome Variant ServerFAM96A
ExAC (Exome Aggregation Consortium)FAM96A (select the gene name)
Genetic variants : HAPMAP84191
Genomic Variants (DGV)FAM96A [DGVbeta]
DECIPHER (Syndromes)15:64364758-64386207  ENSG00000166797
CONAN: Copy Number AnalysisFAM96A 
Mutations
ICGC Data PortalFAM96A 
TCGA Data PortalFAM96A 
Broad Tumor PortalFAM96A
OASIS PortalFAM96A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM96A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM96A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM96A
DgiDB (Drug Gene Interaction Database)FAM96A
DoCM (Curated mutations)FAM96A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM96A (select a term)
intoGenFAM96A
Cancer3DFAM96A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM96A
Genetic Testing Registry FAM96A
NextProtQ9H5X1 [Medical]
TSGene84191
GENETestsFAM96A
Huge Navigator FAM96A [HugePedia]
snp3D : Map Gene to Disease84191
BioCentury BCIQFAM96A
ClinGenFAM96A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84191
Chemical/Pharm GKB GenePA142671829
Clinical trialFAM96A
Miscellaneous
canSAR (ICR)FAM96A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM96A
EVEXFAM96A
GoPubMedFAM96A
iHOPFAM96A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:35 CET 2017

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