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FAM96B (family with sequence similarity 96 member B)

Identity

Alias_namesfamily with sequence similarity 96, member B
Alias_symbol (synonym)CGI-128
MIP18
CIA2B
Other alias
HGNC (Hugo) FAM96B
LocusID (NCBI) 51647
Atlas_Id 63283
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66932055 and ends at 66934423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDC42EP1 (22q13.1) / FAM96B (16q22.1)CHD4 (12p13.31) / FAM96B (16q22.1)FAM96B (16q22.1) / FAM96B (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM96B   24261
Cards
Entrez_Gene (NCBI)FAM96B  51647  family with sequence similarity 96 member B
AliasesCGI-128; CIA2B; MIP18
GeneCards (Weizmann)FAM96B
Ensembl hg19 (Hinxton)ENSG00000166595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166595 [Gene_View]  chr16:66932055-66934423 [Contig_View]  FAM96B [Vega]
ICGC DataPortalENSG00000166595
TCGA cBioPortalFAM96B
AceView (NCBI)FAM96B
Genatlas (Paris)FAM96B
WikiGenes51647
SOURCE (Princeton)FAM96B
Genetics Home Reference (NIH)FAM96B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM96B  -     chr16:66932055-66934423 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM96B  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM96B - 16q22.1 [CytoView hg19]  FAM96B - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM96B [Mapview hg19]  FAM96B [Mapview hg38]
OMIM614778   
Gene and transcription
Genbank (Entrez)AF151886 AF161467 BC001733 BC005023 BI598300
RefSeq transcript (Entrez)NM_016062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM96B
Cluster EST : UnigeneHs.9825 [ NCBI ]
CGAP (NCI)Hs.9825
Alternative Splicing GalleryENSG00000166595
Gene ExpressionFAM96B [ NCBI-GEO ]   FAM96B [ EBI - ARRAY_EXPRESS ]   FAM96B [ SEEK ]   FAM96B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM96B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51647
GTEX Portal (Tissue expression)FAM96B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D0
Splice isoforms : SwissVarQ9Y3D0
PhosPhoSitePlusQ9Y3D0
Domains : Interpro (EBI)DUF59   
Domain families : Pfam (Sanger)DUF59 (PF01883)   
Domain families : Pfam (NCBI)pfam01883   
Conserved Domain (NCBI)FAM96B
DMDM Disease mutations51647
Blocks (Seattle)FAM96B
SuperfamilyQ9Y3D0
Human Protein AtlasENSG00000166595
Peptide AtlasQ9Y3D0
HPRD13033
IPIIPI00007024   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D0
IntAct (EBI)Q9Y3D0
FunCoupENSG00000166595
BioGRIDFAM96B
STRING (EMBL)FAM96B
ZODIACFAM96B
Ontologies - Pathways
QuickGOQ9Y3D0
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  spindle  cytosol  chromosome segregation  iron-sulfur cluster assembly  MMXD complex  CIA complex  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  spindle  cytosol  chromosome segregation  iron-sulfur cluster assembly  MMXD complex  CIA complex  
NDEx NetworkFAM96B
Atlas of Cancer Signalling NetworkFAM96B
Wikipedia pathwaysFAM96B
Orthology - Evolution
OrthoDB51647
GeneTree (enSembl)ENSG00000166595
Phylogenetic Trees/Animal Genes : TreeFamFAM96B
HOVERGENQ9Y3D0
HOGENOMQ9Y3D0
Homologs : HomoloGeneFAM96B
Homology/Alignments : Family Browser (UCSC)FAM96B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM96B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM96B
dbVarFAM96B
ClinVarFAM96B
1000_GenomesFAM96B 
Exome Variant ServerFAM96B
ExAC (Exome Aggregation Consortium)FAM96B (select the gene name)
Genetic variants : HAPMAP51647
Genomic Variants (DGV)FAM96B [DGVbeta]
DECIPHERFAM96B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM96B 
Mutations
ICGC Data PortalFAM96B 
TCGA Data PortalFAM96B 
Broad Tumor PortalFAM96B
OASIS PortalFAM96B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM96B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM96B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM96B
DgiDB (Drug Gene Interaction Database)FAM96B
DoCM (Curated mutations)FAM96B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM96B (select a term)
intoGenFAM96B
Cancer3DFAM96B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614778   
Orphanet
MedgenFAM96B
Genetic Testing Registry FAM96B
NextProtQ9Y3D0 [Medical]
TSGene51647
GENETestsFAM96B
Huge Navigator FAM96B [HugePedia]
snp3D : Map Gene to Disease51647
BioCentury BCIQFAM96B
ClinGenFAM96B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51647
Chemical/Pharm GKB GenePA142671830
Clinical trialFAM96B
Miscellaneous
canSAR (ICR)FAM96B (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM96B
EVEXFAM96B
GoPubMedFAM96B
iHOPFAM96B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:11:45 CEST 2017

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