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FAM98A (family with sequence similarity 98, member A)

Identity

Alias_namesfamily with sequence similarity 98, member A
Alias_symbol (synonym)DKFZP564F0522
Other alias-
HGNC (Hugo) FAM98A
LocusID (NCBI) 25940
Atlas_Id 63284
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 33808728 and ends at 33824429 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM98A (2p22.3) / ZCCHC17 (1p35.2)GALNT14 (2p23.1) / FAM98A (2p22.3)MIR548N (2q31.2) / FAM98A (2p22.3)
TBC1D24 (16p13.3) / FAM98A (2p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM98A   24520
Cards
Entrez_Gene (NCBI)FAM98A  25940  family with sequence similarity 98, member A
Aliases
GeneCards (Weizmann)FAM98A
Ensembl hg19 (Hinxton)ENSG00000119812 [Gene_View]  chr2:33808728-33824429 [Contig_View]  FAM98A [Vega]
Ensembl hg38 (Hinxton)ENSG00000119812 [Gene_View]  chr2:33808728-33824429 [Contig_View]  FAM98A [Vega]
ICGC DataPortalENSG00000119812
TCGA cBioPortalFAM98A
AceView (NCBI)FAM98A
Genatlas (Paris)FAM98A
WikiGenes25940
SOURCE (Princeton)FAM98A
Genetics Home Reference (NIH)FAM98A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM98A  -     chr2:33808728-33824429 -  2p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM98A  -     2p22.3   [Description]    (hg38-Dec_2013)
EnsemblFAM98A - 2p22.3 [CytoView hg19]  FAM98A - 2p22.3 [CytoView hg38]
Mapping of homologs : NCBIFAM98A [Mapview hg19]  FAM98A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027432 AK074867 AK096187 AK300023 AK302233
RefSeq transcript (Entrez)NM_001304538 NM_015475
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)FAM98A
Cluster EST : UnigeneHs.468140 [ NCBI ]
CGAP (NCI)Hs.468140
Alternative Splicing GalleryENSG00000119812
Gene ExpressionFAM98A [ NCBI-GEO ]   FAM98A [ EBI - ARRAY_EXPRESS ]   FAM98A [ SEEK ]   FAM98A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM98A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25940
GTEX Portal (Tissue expression)FAM98A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCA5
Splice isoforms : SwissVarQ8NCA5
PhosPhoSitePlusQ8NCA5
Domains : Interpro (EBI)Uncharacterised_FAM98   
Domain families : Pfam (Sanger)DUF2465 (PF10239)   
Domain families : Pfam (NCBI)pfam10239   
Conserved Domain (NCBI)FAM98A
DMDM Disease mutations25940
Blocks (Seattle)FAM98A
SuperfamilyQ8NCA5
Human Protein AtlasENSG00000119812
Peptide AtlasQ8NCA5
HPRD16808
IPIIPI00174442   IPI00872161   IPI00894178   IPI01009687   IPI00921584   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCA5
IntAct (EBI)Q8NCA5
FunCoupENSG00000119812
BioGRIDFAM98A
STRING (EMBL)FAM98A
ZODIACFAM98A
Ontologies - Pathways
QuickGOQ8NCA5
Ontology : AmiGOprotein binding  poly(A) RNA binding  tRNA-splicing ligase complex  
Ontology : EGO-EBIprotein binding  poly(A) RNA binding  tRNA-splicing ligase complex  
NDEx NetworkFAM98A
Atlas of Cancer Signalling NetworkFAM98A
Wikipedia pathwaysFAM98A
Orthology - Evolution
OrthoDB25940
GeneTree (enSembl)ENSG00000119812
Phylogenetic Trees/Animal Genes : TreeFamFAM98A
HOVERGENQ8NCA5
HOGENOMQ8NCA5
Homologs : HomoloGeneFAM98A
Homology/Alignments : Family Browser (UCSC)FAM98A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM98A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM98A
dbVarFAM98A
ClinVarFAM98A
1000_GenomesFAM98A 
Exome Variant ServerFAM98A
ExAC (Exome Aggregation Consortium)FAM98A (select the gene name)
Genetic variants : HAPMAP25940
Genomic Variants (DGV)FAM98A [DGVbeta]
DECIPHER (Syndromes)2:33808728-33824429  ENSG00000119812
CONAN: Copy Number AnalysisFAM98A 
Mutations
ICGC Data PortalFAM98A 
TCGA Data PortalFAM98A 
Broad Tumor PortalFAM98A
OASIS PortalFAM98A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM98A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM98A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM98A
DgiDB (Drug Gene Interaction Database)FAM98A
DoCM (Curated mutations)FAM98A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM98A (select a term)
intoGenFAM98A
Cancer3DFAM98A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM98A
Genetic Testing Registry FAM98A
NextProtQ8NCA5 [Medical]
TSGene25940
GENETestsFAM98A
Huge Navigator FAM98A [HugePedia]
snp3D : Map Gene to Disease25940
BioCentury BCIQFAM98A
ClinGenFAM98A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25940
Chemical/Pharm GKB GenePA142671777
Clinical trialFAM98A
Miscellaneous
canSAR (ICR)FAM98A (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM98A
EVEXFAM98A
GoPubMedFAM98A
iHOPFAM98A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:28 CET 2017

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