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FAM98B (family with sequence similarity 98 member B)

Identity

Alias_namesfamily with sequence similarity 98, member B
Alias_symbol (synonym)FLJ38426
Other alias-
HGNC (Hugo) FAM98B
LocusID (NCBI) 283742
Atlas_Id 63285
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 38454127 and ends at 38487710 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C15orf41 (15q14) / FAM98B (15q14)FAM98B (15q14) / EFL1 (15q25.2)FAM98B (15q14) / PER2 (2q37.3)
FAM98B (15q14) / RASGRP1 (15q14)FAM98B RASGRP1FAM98B EFTUD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM98B   26773
Cards
Entrez_Gene (NCBI)FAM98B  283742  family with sequence similarity 98 member B
Aliases
GeneCards (Weizmann)FAM98B
Ensembl hg19 (Hinxton)ENSG00000171262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171262 [Gene_View]  chr15:38454127-38487710 [Contig_View]  FAM98B [Vega]
ICGC DataPortalENSG00000171262
TCGA cBioPortalFAM98B
AceView (NCBI)FAM98B
Genatlas (Paris)FAM98B
WikiGenes283742
SOURCE (Princeton)FAM98B
Genetics Home Reference (NIH)FAM98B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM98B  -     chr15:38454127-38487710 +  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM98B  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblFAM98B - 15q14 [CytoView hg19]  FAM98B - 15q14 [CytoView hg38]
Mapping of homologs : NCBIFAM98B [Mapview hg19]  FAM98B [Mapview hg38]
OMIM616142   
Gene and transcription
Genbank (Entrez)AI638256 AK095745 BC035600 BC045690 BC093898
RefSeq transcript (Entrez)NM_001042429 NM_173611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM98B
Cluster EST : UnigeneHs.744003 [ NCBI ]
CGAP (NCI)Hs.744003
Alternative Splicing GalleryENSG00000171262
Gene ExpressionFAM98B [ NCBI-GEO ]   FAM98B [ EBI - ARRAY_EXPRESS ]   FAM98B [ SEEK ]   FAM98B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM98B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283742
GTEX Portal (Tissue expression)FAM98B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52LJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52LJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52LJ0
Splice isoforms : SwissVarQ52LJ0
PhosPhoSitePlusQ52LJ0
Domains : Interpro (EBI)Uncharacterised_FAM98   
Domain families : Pfam (Sanger)DUF2465 (PF10239)   
Domain families : Pfam (NCBI)pfam10239   
Conserved Domain (NCBI)FAM98B
DMDM Disease mutations283742
Blocks (Seattle)FAM98B
SuperfamilyQ52LJ0
Human Protein AtlasENSG00000171262
Peptide AtlasQ52LJ0
HPRD08786
IPIIPI00167572   IPI00760837   
Protein Interaction databases
DIP (DOE-UCLA)Q52LJ0
IntAct (EBI)Q52LJ0
FunCoupENSG00000171262
BioGRIDFAM98B
STRING (EMBL)FAM98B
ZODIACFAM98B
Ontologies - Pathways
QuickGOQ52LJ0
Ontology : AmiGORNA binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  tRNA splicing, via endonucleolytic cleavage and ligation  intracellular membrane-bounded organelle  tRNA-splicing ligase complex  
Ontology : EGO-EBIRNA binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  tRNA splicing, via endonucleolytic cleavage and ligation  intracellular membrane-bounded organelle  tRNA-splicing ligase complex  
NDEx NetworkFAM98B
Atlas of Cancer Signalling NetworkFAM98B
Wikipedia pathwaysFAM98B
Orthology - Evolution
OrthoDB283742
GeneTree (enSembl)ENSG00000171262
Phylogenetic Trees/Animal Genes : TreeFamFAM98B
HOVERGENQ52LJ0
HOGENOMQ52LJ0
Homologs : HomoloGeneFAM98B
Homology/Alignments : Family Browser (UCSC)FAM98B
Gene fusions - Rearrangements
Fusion: TCGAFAM98B RASGRP1
Fusion: TCGAFAM98B EFTUD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM98B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM98B
dbVarFAM98B
ClinVarFAM98B
1000_GenomesFAM98B 
Exome Variant ServerFAM98B
ExAC (Exome Aggregation Consortium)FAM98B (select the gene name)
Genetic variants : HAPMAP283742
Genomic Variants (DGV)FAM98B [DGVbeta]
DECIPHERFAM98B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM98B 
Mutations
ICGC Data PortalFAM98B 
TCGA Data PortalFAM98B 
Broad Tumor PortalFAM98B
OASIS PortalFAM98B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM98B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM98B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM98B
DgiDB (Drug Gene Interaction Database)FAM98B
DoCM (Curated mutations)FAM98B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM98B (select a term)
intoGenFAM98B
Cancer3DFAM98B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616142   
Orphanet
MedgenFAM98B
Genetic Testing Registry FAM98B
NextProtQ52LJ0 [Medical]
TSGene283742
GENETestsFAM98B
Target ValidationFAM98B
Huge Navigator FAM98B [HugePedia]
snp3D : Map Gene to Disease283742
BioCentury BCIQFAM98B
ClinGenFAM98B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283742
Chemical/Pharm GKB GenePA142671778
Clinical trialFAM98B
Miscellaneous
canSAR (ICR)FAM98B (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM98B
EVEXFAM98B
GoPubMedFAM98B
iHOPFAM98B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:54 CEST 2017

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