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FAM98C (family with sequence similarity 98 member C)

Identity

Alias_namesfamily with sequence similarity 98, member C
Alias_symbol (synonym)FLJ44669
Other alias-
HGNC (Hugo) FAM98C
LocusID (NCBI) 147965
Atlas_Id 63286
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38403135 and ends at 38409088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM98C (19q13.2) / FAM98C (19q13.2)FAM98C (19q13.2) / WDR33 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM98C   27119
Cards
Entrez_Gene (NCBI)FAM98C  147965  family with sequence similarity 98 member C
Aliases
GeneCards (Weizmann)FAM98C
Ensembl hg19 (Hinxton)ENSG00000130244 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130244 [Gene_View]  chr19:38403135-38409088 [Contig_View]  FAM98C [Vega]
ICGC DataPortalENSG00000130244
TCGA cBioPortalFAM98C
AceView (NCBI)FAM98C
Genatlas (Paris)FAM98C
WikiGenes147965
SOURCE (Princeton)FAM98C
Genetics Home Reference (NIH)FAM98C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM98C  -     chr19:38403135-38409088 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM98C  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblFAM98C - 19q13.2 [CytoView hg19]  FAM98C - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIFAM98C [Mapview hg19]  FAM98C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128745 BC034383 BC036482 BC080606 BC100033
RefSeq transcript (Entrez)NM_174905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM98C
Cluster EST : UnigeneHs.355162 [ NCBI ]
CGAP (NCI)Hs.355162
Alternative Splicing GalleryENSG00000130244
Gene ExpressionFAM98C [ NCBI-GEO ]   FAM98C [ EBI - ARRAY_EXPRESS ]   FAM98C [ SEEK ]   FAM98C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM98C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147965
GTEX Portal (Tissue expression)FAM98C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RN3
Splice isoforms : SwissVarQ17RN3
PhosPhoSitePlusQ17RN3
Domains : Interpro (EBI)Uncharacterised_FAM98   
Domain families : Pfam (Sanger)DUF2465 (PF10239)   
Domain families : Pfam (NCBI)pfam10239   
Conserved Domain (NCBI)FAM98C
DMDM Disease mutations147965
Blocks (Seattle)FAM98C
SuperfamilyQ17RN3
Human Protein AtlasENSG00000130244
Peptide AtlasQ17RN3
HPRD14077
IPIIPI00470776   IPI00413170   
Protein Interaction databases
DIP (DOE-UCLA)Q17RN3
IntAct (EBI)Q17RN3
FunCoupENSG00000130244
BioGRIDFAM98C
STRING (EMBL)FAM98C
ZODIACFAM98C
Ontologies - Pathways
QuickGOQ17RN3
Ontology : AmiGOtRNA-splicing ligase complex  
Ontology : EGO-EBItRNA-splicing ligase complex  
NDEx NetworkFAM98C
Atlas of Cancer Signalling NetworkFAM98C
Wikipedia pathwaysFAM98C
Orthology - Evolution
OrthoDB147965
GeneTree (enSembl)ENSG00000130244
Phylogenetic Trees/Animal Genes : TreeFamFAM98C
HOVERGENQ17RN3
HOGENOMQ17RN3
Homologs : HomoloGeneFAM98C
Homology/Alignments : Family Browser (UCSC)FAM98C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM98C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM98C
dbVarFAM98C
ClinVarFAM98C
1000_GenomesFAM98C 
Exome Variant ServerFAM98C
ExAC (Exome Aggregation Consortium)FAM98C (select the gene name)
Genetic variants : HAPMAP147965
Genomic Variants (DGV)FAM98C [DGVbeta]
DECIPHERFAM98C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM98C 
Mutations
ICGC Data PortalFAM98C 
TCGA Data PortalFAM98C 
Broad Tumor PortalFAM98C
OASIS PortalFAM98C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM98C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM98C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM98C
DgiDB (Drug Gene Interaction Database)FAM98C
DoCM (Curated mutations)FAM98C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM98C (select a term)
intoGenFAM98C
Cancer3DFAM98C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM98C
Genetic Testing Registry FAM98C
NextProtQ17RN3 [Medical]
TSGene147965
GENETestsFAM98C
Target ValidationFAM98C
Huge Navigator FAM98C [HugePedia]
snp3D : Map Gene to Disease147965
BioCentury BCIQFAM98C
ClinGenFAM98C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147965
Chemical/Pharm GKB GenePA142671779
Clinical trialFAM98C
Miscellaneous
canSAR (ICR)FAM98C (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM98C
EVEXFAM98C
GoPubMedFAM98C
iHOPFAM98C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:17 CEST 2017

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