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FAM9A (family with sequence similarity 9 member A)

Identity

Alias_namesfamily with sequence similarity 9, member A
Alias_symbol (synonym)TEX39A
Other alias
HGNC (Hugo) FAM9A
LocusID (NCBI) 171482
Atlas_Id 63289
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 8790796 and ends at 8801337 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM9A   18403
Cards
Entrez_Gene (NCBI)FAM9A  171482  family with sequence similarity 9 member A
AliasesTEX39A
GeneCards (Weizmann)FAM9A
Ensembl hg19 (Hinxton)ENSG00000183304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183304 [Gene_View]  chrX:8790796-8801337 [Contig_View]  FAM9A [Vega]
ICGC DataPortalENSG00000183304
TCGA cBioPortalFAM9A
AceView (NCBI)FAM9A
Genatlas (Paris)FAM9A
WikiGenes171482
SOURCE (Princeton)FAM9A
Genetics Home Reference (NIH)FAM9A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM9A  -     chrX:8790796-8801337 -  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM9A  -     Xp22.31   [Description]    (hg19-Feb_2009)
EnsemblFAM9A - Xp22.31 [CytoView hg19]  FAM9A - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIFAM9A [Mapview hg19]  FAM9A [Mapview hg38]
OMIM300477   
Gene and transcription
Genbank (Entrez)AF494343 BC112022 BC113449 BC143805 HQ258571
RefSeq transcript (Entrez)NM_001171186 NM_174951
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM9A
Cluster EST : UnigeneHs.382062 [ NCBI ]
CGAP (NCI)Hs.382062
Alternative Splicing GalleryENSG00000183304
Gene ExpressionFAM9A [ NCBI-GEO ]   FAM9A [ EBI - ARRAY_EXPRESS ]   FAM9A [ SEEK ]   FAM9A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM9A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171482
GTEX Portal (Tissue expression)FAM9A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU1
Splice isoforms : SwissVarQ8IZU1
PhosPhoSitePlusQ8IZU1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM9A
DMDM Disease mutations171482
Blocks (Seattle)FAM9A
SuperfamilyQ8IZU1
Human Protein AtlasENSG00000183304
Peptide AtlasQ8IZU1
HPRD06506
IPIIPI00218076   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU1
IntAct (EBI)Q8IZU1
FunCoupENSG00000183304
BioGRIDFAM9A
STRING (EMBL)FAM9A
ZODIACFAM9A
Ontologies - Pathways
QuickGOQ8IZU1
Ontology : AmiGOprotein binding  nucleus  nucleolus  spermatid development  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  spermatid development  
NDEx NetworkFAM9A
Atlas of Cancer Signalling NetworkFAM9A
Wikipedia pathwaysFAM9A
Orthology - Evolution
OrthoDB171482
GeneTree (enSembl)ENSG00000183304
Phylogenetic Trees/Animal Genes : TreeFamFAM9A
HOVERGENQ8IZU1
HOGENOMQ8IZU1
Homologs : HomoloGeneFAM9A
Homology/Alignments : Family Browser (UCSC)FAM9A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM9A
dbVarFAM9A
ClinVarFAM9A
1000_GenomesFAM9A 
Exome Variant ServerFAM9A
ExAC (Exome Aggregation Consortium)FAM9A (select the gene name)
Genetic variants : HAPMAP171482
Genomic Variants (DGV)FAM9A [DGVbeta]
DECIPHERFAM9A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM9A 
Mutations
ICGC Data PortalFAM9A 
TCGA Data PortalFAM9A 
Broad Tumor PortalFAM9A
OASIS PortalFAM9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM9A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM9A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM9A
DgiDB (Drug Gene Interaction Database)FAM9A
DoCM (Curated mutations)FAM9A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM9A (select a term)
intoGenFAM9A
Cancer3DFAM9A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300477   
Orphanet
MedgenFAM9A
Genetic Testing Registry FAM9A
NextProtQ8IZU1 [Medical]
TSGene171482
GENETestsFAM9A
Target ValidationFAM9A
Huge Navigator FAM9A [HugePedia]
snp3D : Map Gene to Disease171482
BioCentury BCIQFAM9A
ClinGenFAM9A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171482
Chemical/Pharm GKB GenePA27992
Clinical trialFAM9A
Miscellaneous
canSAR (ICR)FAM9A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM9A
EVEXFAM9A
GoPubMedFAM9A
iHOPFAM9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:18 CEST 2017

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