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FAM9A (family with sequence similarity 9 member A)

Identity

Alias (NCBI)TEX39A
HGNC (Hugo) FAM9A
HGNC Alias symbTEX39A
HGNC Alias nametestis expressed 39A
HGNC Previous namefamily with sequence similarity 9, member A
LocusID (NCBI) 171482
Atlas_Id 63289
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 8790796 and ends at 8801383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM9A   18403
Cards
Entrez_Gene (NCBI)FAM9A    family with sequence similarity 9 member A
AliasesTEX39A
GeneCards (Weizmann)FAM9A
Ensembl hg19 (Hinxton)ENSG00000183304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183304 [Gene_View]  ENSG00000183304 [Sequence]  chrX:8790796-8801383 [Contig_View]  FAM9A [Vega]
ICGC DataPortalENSG00000183304
TCGA cBioPortalFAM9A
AceView (NCBI)FAM9A
Genatlas (Paris)FAM9A
SOURCE (Princeton)FAM9A
Genetics Home Reference (NIH)FAM9A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM9A  -     chrX:8790796-8801383 -  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM9A  -     Xp22.31   [Description]    (hg19-Feb_2009)
GoldenPathFAM9A - Xp22.31 [CytoView hg19]  FAM9A - Xp22.31 [CytoView hg38]
ImmunoBaseENSG00000183304
Genome Data Viewer NCBIFAM9A [Mapview hg19]  
OMIM300477   
Gene and transcription
Genbank (Entrez)AF494343 BC112022 BC113449 BC143805
RefSeq transcript (Entrez)NM_001171186 NM_174951
Consensus coding sequences : CCDS (NCBI)FAM9A
Gene ExpressionFAM9A [ NCBI-GEO ]   FAM9A [ EBI - ARRAY_EXPRESS ]   FAM9A [ SEEK ]   FAM9A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM9A [ Firebrowse - Broad ]
GenevisibleExpression of FAM9A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171482
GTEX Portal (Tissue expression)FAM9A
Human Protein AtlasENSG00000183304-FAM9A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU1
PhosPhoSitePlusQ8IZU1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM9A
SuperfamilyQ8IZU1
AlphaFold pdb e-kbQ8IZU1   
Human Protein Atlas [tissue]ENSG00000183304-FAM9A [tissue]
HPRD06506
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU1
IntAct (EBI)Q8IZU1
BioGRIDFAM9A
STRING (EMBL)FAM9A
ZODIACFAM9A
Ontologies - Pathways
QuickGOQ8IZU1
Ontology : AmiGOsynaptonemal complex  protein binding  nucleolus  spermatid development  meiotic cell cycle  
Ontology : EGO-EBIsynaptonemal complex  protein binding  nucleolus  spermatid development  meiotic cell cycle  
NDEx NetworkFAM9A
Atlas of Cancer Signalling NetworkFAM9A
Wikipedia pathwaysFAM9A
Orthology - Evolution
OrthoDB171482
GeneTree (enSembl)ENSG00000183304
Phylogenetic Trees/Animal Genes : TreeFamFAM9A
Homologs : HomoloGeneFAM9A
Homology/Alignments : Family Browser (UCSC)FAM9A
Gene fusions - Rearrangements
Fusion : QuiverFAM9A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM9A
dbVarFAM9A
ClinVarFAM9A
MonarchFAM9A
1000_GenomesFAM9A 
Exome Variant ServerFAM9A
GNOMAD BrowserENSG00000183304
Varsome BrowserFAM9A
ACMGFAM9A variants
VarityQ8IZU1
Genomic Variants (DGV)FAM9A [DGVbeta]
DECIPHERFAM9A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM9A 
Mutations
ICGC Data PortalFAM9A 
TCGA Data PortalFAM9A 
Broad Tumor PortalFAM9A
OASIS PortalFAM9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM9A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM9A
Mutations and Diseases : HGMDFAM9A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM9A
DgiDB (Drug Gene Interaction Database)FAM9A
DoCM (Curated mutations)FAM9A
CIViC (Clinical Interpretations of Variants in Cancer)FAM9A
Cancer3DFAM9A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300477   
Orphanet
DisGeNETFAM9A
MedgenFAM9A
Genetic Testing Registry FAM9A
NextProtQ8IZU1 [Medical]
GENETestsFAM9A
Target ValidationFAM9A
Huge Navigator FAM9A [HugePedia]
ClinGenFAM9A
Clinical trials, drugs, therapy
MyCancerGenomeFAM9A
Protein Interactions : CTDFAM9A
Pharm GKB GenePA27992
PharosQ8IZU1
Clinical trialFAM9A
Miscellaneous
canSAR (ICR)FAM9A
HarmonizomeFAM9A
DataMed IndexFAM9A
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:18 CEST 2021

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