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FAM9B (family with sequence similarity 9 member B)

Identity

Alias (NCBI)TEX39B
HGNC (Hugo) FAM9B
HGNC Alias symbTEX39B
HGNC Alias nametestis expressed 39B
HGNC Previous namefamily with sequence similarity 9, member B
LocusID (NCBI) 171483
Atlas_Id 63290
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 9024232 and ends at 9034127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM9B   18404
Cards
Entrez_Gene (NCBI)FAM9B    family with sequence similarity 9 member B
AliasesTEX39B
GeneCards (Weizmann)FAM9B
Ensembl hg19 (Hinxton)ENSG00000177138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177138 [Gene_View]  ENSG00000177138 [Sequence]  chrX:9024232-9034127 [Contig_View]  FAM9B [Vega]
ICGC DataPortalENSG00000177138
TCGA cBioPortalFAM9B
AceView (NCBI)FAM9B
Genatlas (Paris)FAM9B
SOURCE (Princeton)FAM9B
Genetics Home Reference (NIH)FAM9B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM9B  -     chrX:9024232-9034127 -  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM9B  -     Xp22.31   [Description]    (hg19-Feb_2009)
GoldenPathFAM9B - Xp22.31 [CytoView hg19]  FAM9B - Xp22.31 [CytoView hg38]
ImmunoBaseENSG00000177138
Genome Data Viewer NCBIFAM9B [Mapview hg19]  
OMIM300478   
Gene and transcription
Genbank (Entrez)AF494344 AK097501 AK128470 BC120955 BC120956
RefSeq transcript (Entrez)NM_173696 NM_205849
Consensus coding sequences : CCDS (NCBI)FAM9B
Gene ExpressionFAM9B [ NCBI-GEO ]   FAM9B [ EBI - ARRAY_EXPRESS ]   FAM9B [ SEEK ]   FAM9B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM9B [ Firebrowse - Broad ]
GenevisibleExpression of FAM9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171483
GTEX Portal (Tissue expression)FAM9B
Human Protein AtlasENSG00000177138-FAM9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU0
PhosPhoSitePlusQ8IZU0
Domains : Interpro (EBI)XLR/SYCP3/FAM9_dom   
Domain families : Pfam (Sanger)Cor1 (PF04803)   
Domain families : Pfam (NCBI)pfam04803   
Conserved Domain (NCBI)FAM9B
SuperfamilyQ8IZU0
AlphaFold pdb e-kbQ8IZU0   
Human Protein Atlas [tissue]ENSG00000177138-FAM9B [tissue]
HPRD06566
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU0
IntAct (EBI)Q8IZU0
BioGRIDFAM9B
STRING (EMBL)FAM9B
ZODIACFAM9B
Ontologies - Pathways
QuickGOQ8IZU0
Ontology : AmiGOsynaptonemal complex  protein binding  nucleoplasm  spermatid development  meiotic cell cycle  
Ontology : EGO-EBIsynaptonemal complex  protein binding  nucleoplasm  spermatid development  meiotic cell cycle  
NDEx NetworkFAM9B
Atlas of Cancer Signalling NetworkFAM9B
Wikipedia pathwaysFAM9B
Orthology - Evolution
OrthoDB171483
GeneTree (enSembl)ENSG00000177138
Phylogenetic Trees/Animal Genes : TreeFamFAM9B
Homologs : HomoloGeneFAM9B
Homology/Alignments : Family Browser (UCSC)FAM9B
Gene fusions - Rearrangements
Fusion : QuiverFAM9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM9B
dbVarFAM9B
ClinVarFAM9B
MonarchFAM9B
1000_GenomesFAM9B 
Exome Variant ServerFAM9B
GNOMAD BrowserENSG00000177138
Varsome BrowserFAM9B
ACMGFAM9B variants
VarityQ8IZU0
Genomic Variants (DGV)FAM9B [DGVbeta]
DECIPHERFAM9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM9B 
Mutations
ICGC Data PortalFAM9B 
TCGA Data PortalFAM9B 
Broad Tumor PortalFAM9B
OASIS PortalFAM9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM9B
Mutations and Diseases : HGMDFAM9B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM9B
DgiDB (Drug Gene Interaction Database)FAM9B
DoCM (Curated mutations)FAM9B
CIViC (Clinical Interpretations of Variants in Cancer)FAM9B
Cancer3DFAM9B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300478   
Orphanet
DisGeNETFAM9B
MedgenFAM9B
Genetic Testing Registry FAM9B
NextProtQ8IZU0 [Medical]
GENETestsFAM9B
Target ValidationFAM9B
Huge Navigator FAM9B [HugePedia]
ClinGenFAM9B
Clinical trials, drugs, therapy
MyCancerGenomeFAM9B
Protein Interactions : CTDFAM9B
Pharm GKB GenePA27993
PharosQ8IZU0
Clinical trialFAM9B
Miscellaneous
canSAR (ICR)FAM9B
HarmonizomeFAM9B
DataMed IndexFAM9B
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:18 CEST 2021

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