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FAM9B (family with sequence similarity 9 member B)

Identity

Alias_namesfamily with sequence similarity 9, member B
Alias_symbol (synonym)TEX39B
Other alias
HGNC (Hugo) FAM9B
LocusID (NCBI) 171483
Atlas_Id 63290
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 9024232 and ends at 9034127 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM9B   18404
Cards
Entrez_Gene (NCBI)FAM9B  171483  family with sequence similarity 9 member B
AliasesTEX39B
GeneCards (Weizmann)FAM9B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:9024232-9034127 [Contig_View]  FAM9B [Vega]
TCGA cBioPortalFAM9B
AceView (NCBI)FAM9B
Genatlas (Paris)FAM9B
WikiGenes171483
SOURCE (Princeton)FAM9B
Genetics Home Reference (NIH)FAM9B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM9B  -     chrX:9024232-9034127 -  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM9B  -     Xp22.31   [Description]    (hg19-Feb_2009)
EnsemblFAM9B - Xp22.31 [CytoView hg19]  FAM9B - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIFAM9B [Mapview hg19]  FAM9B [Mapview hg38]
OMIM300478   
Gene and transcription
Genbank (Entrez)AF494344 AK097501 AK128470 BC120955 BC120956
RefSeq transcript (Entrez)NM_173696 NM_205849
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM9B
Cluster EST : UnigeneHs.733351 [ NCBI ]
CGAP (NCI)Hs.733351
Gene ExpressionFAM9B [ NCBI-GEO ]   FAM9B [ EBI - ARRAY_EXPRESS ]   FAM9B [ SEEK ]   FAM9B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171483
GTEX Portal (Tissue expression)FAM9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU0
Splice isoforms : SwissVarQ8IZU0
PhosPhoSitePlusQ8IZU0
Domains : Interpro (EBI)XLR/SYCP3/FAM9_dom   
Domain families : Pfam (Sanger)Cor1 (PF04803)   
Domain families : Pfam (NCBI)pfam04803   
Conserved Domain (NCBI)FAM9B
DMDM Disease mutations171483
Blocks (Seattle)FAM9B
SuperfamilyQ8IZU0
Peptide AtlasQ8IZU0
HPRD06566
IPIIPI00218075   IPI00167413   IPI00978071   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU0
IntAct (EBI)Q8IZU0
BioGRIDFAM9B
STRING (EMBL)FAM9B
ZODIACFAM9B
Ontologies - Pathways
QuickGOQ8IZU0
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  spermatid development  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  spermatid development  
NDEx NetworkFAM9B
Atlas of Cancer Signalling NetworkFAM9B
Wikipedia pathwaysFAM9B
Orthology - Evolution
OrthoDB171483
Phylogenetic Trees/Animal Genes : TreeFamFAM9B
HOVERGENQ8IZU0
HOGENOMQ8IZU0
Homologs : HomoloGeneFAM9B
Homology/Alignments : Family Browser (UCSC)FAM9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM9B
dbVarFAM9B
ClinVarFAM9B
1000_GenomesFAM9B 
Exome Variant ServerFAM9B
ExAC (Exome Aggregation Consortium)FAM9B (select the gene name)
Genetic variants : HAPMAP171483
Genomic Variants (DGV)FAM9B [DGVbeta]
DECIPHERFAM9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM9B 
Mutations
ICGC Data PortalFAM9B 
TCGA Data PortalFAM9B 
Broad Tumor PortalFAM9B
OASIS PortalFAM9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM9B
DgiDB (Drug Gene Interaction Database)FAM9B
DoCM (Curated mutations)FAM9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM9B (select a term)
intoGenFAM9B
Cancer3DFAM9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300478   
Orphanet
MedgenFAM9B
Genetic Testing Registry FAM9B
NextProtQ8IZU0 [Medical]
TSGene171483
GENETestsFAM9B
Target ValidationFAM9B
Huge Navigator FAM9B [HugePedia]
snp3D : Map Gene to Disease171483
BioCentury BCIQFAM9B
ClinGenFAM9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171483
Chemical/Pharm GKB GenePA27993
Clinical trialFAM9B
Miscellaneous
canSAR (ICR)FAM9B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM9B
EVEXFAM9B
GoPubMedFAM9B
iHOPFAM9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:18 CEST 2017

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