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FAM9C (family with sequence similarity 9 member C)

Identity

Alias_namesfamily with sequence similarity 9
Alias_symbol (synonym)TEX39C
Other alias
HGNC (Hugo) FAM9C
LocusID (NCBI) 171484
Atlas_Id 53985
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 13035617 and ends at 13044798 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM9C   18405
Cards
Entrez_Gene (NCBI)FAM9C  171484  family with sequence similarity 9 member C
AliasesTEX39C
GeneCards (Weizmann)FAM9C
Ensembl hg19 (Hinxton)ENSG00000187268 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187268 [Gene_View]  chrX:13035617-13044798 [Contig_View]  FAM9C [Vega]
ICGC DataPortalENSG00000187268
TCGA cBioPortalFAM9C
AceView (NCBI)FAM9C
Genatlas (Paris)FAM9C
WikiGenes171484
SOURCE (Princeton)FAM9C
Genetics Home Reference (NIH)FAM9C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM9C  -     chrX:13035617-13044798 -  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM9C  -     Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblFAM9C - Xp22.2 [CytoView hg19]  FAM9C - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIFAM9C [Mapview hg19]  FAM9C [Mapview hg38]
OMIM300479   
Gene and transcription
Genbank (Entrez)AF494345 AK313776 BC127957 BX647580 BX648111
RefSeq transcript (Entrez)NM_174901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM9C
Cluster EST : UnigeneHs.667546 [ NCBI ]
CGAP (NCI)Hs.667546
Alternative Splicing GalleryENSG00000187268
Gene ExpressionFAM9C [ NCBI-GEO ]   FAM9C [ EBI - ARRAY_EXPRESS ]   FAM9C [ SEEK ]   FAM9C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM9C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171484
GTEX Portal (Tissue expression)FAM9C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZT9
Splice isoforms : SwissVarQ8IZT9
PhosPhoSitePlusQ8IZT9
Domains : Interpro (EBI)XLR/SYCP3/FAM9_dom   
Domain families : Pfam (Sanger)Cor1 (PF04803)   
Domain families : Pfam (NCBI)pfam04803   
Conserved Domain (NCBI)FAM9C
DMDM Disease mutations171484
Blocks (Seattle)FAM9C
SuperfamilyQ8IZT9
Human Protein AtlasENSG00000187268
Peptide AtlasQ8IZT9
HPRD06507
IPIIPI00218074   IPI00552954   IPI00643416   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZT9
IntAct (EBI)Q8IZT9
FunCoupENSG00000187268
BioGRIDFAM9C
STRING (EMBL)FAM9C
ZODIACFAM9C
Ontologies - Pathways
QuickGOQ8IZT9
Ontology : AmiGOprotein binding  nucleus  spermatid development  
Ontology : EGO-EBIprotein binding  nucleus  spermatid development  
NDEx NetworkFAM9C
Atlas of Cancer Signalling NetworkFAM9C
Wikipedia pathwaysFAM9C
Orthology - Evolution
OrthoDB171484
GeneTree (enSembl)ENSG00000187268
Phylogenetic Trees/Animal Genes : TreeFamFAM9C
HOVERGENQ8IZT9
HOGENOMQ8IZT9
Homologs : HomoloGeneFAM9C
Homology/Alignments : Family Browser (UCSC)FAM9C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM9C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM9C
dbVarFAM9C
ClinVarFAM9C
1000_GenomesFAM9C 
Exome Variant ServerFAM9C
ExAC (Exome Aggregation Consortium)FAM9C (select the gene name)
Genetic variants : HAPMAP171484
Genomic Variants (DGV)FAM9C [DGVbeta]
DECIPHERFAM9C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM9C 
Mutations
ICGC Data PortalFAM9C 
TCGA Data PortalFAM9C 
Broad Tumor PortalFAM9C
OASIS PortalFAM9C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM9C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM9C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM9C
DgiDB (Drug Gene Interaction Database)FAM9C
DoCM (Curated mutations)FAM9C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM9C (select a term)
intoGenFAM9C
Cancer3DFAM9C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300479   
Orphanet
MedgenFAM9C
Genetic Testing Registry FAM9C
NextProtQ8IZT9 [Medical]
TSGene171484
GENETestsFAM9C
Target ValidationFAM9C
Huge Navigator FAM9C [HugePedia]
snp3D : Map Gene to Disease171484
BioCentury BCIQFAM9C
ClinGenFAM9C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171484
Chemical/Pharm GKB GenePA27994
Clinical trialFAM9C
Miscellaneous
canSAR (ICR)FAM9C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM9C
EVEXFAM9C
GoPubMedFAM9C
iHOPFAM9C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:25 CEST 2017

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