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FANCB (Fanconi anemia complementation group B)

Identity

Other namesFA2
FAAP90
FAAP95
FAB
FACB
HGNC (Hugo) FANCB
LocusID (NCBI) 2187
Atlas_Id 49864
Location Xp22.2
Location_base_pair Starts at 14861529 and ends at 14891184 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas)
  Fanconi anaemia

External links

Nomenclature
HGNC (Hugo)FANCB   3583
Cards
Entrez_Gene (NCBI)FANCB  2187  Fanconi anemia complementation group B
GeneCards (Weizmann)FANCB
Ensembl hg19 (Hinxton)ENSG00000181544 [Gene_View]  chrX:14861529-14891184 [Contig_View]  FANCB [Vega]
Ensembl hg38 (Hinxton)ENSG00000181544 [Gene_View]  chrX:14861529-14891184 [Contig_View]  FANCB [Vega]
ICGC DataPortalENSG00000181544
TCGA cBioPortalFANCB
AceView (NCBI)FANCB
Genatlas (Paris)FANCB
WikiGenes2187
SOURCE (Princeton)FANCB
Genomic and cartography
GoldenPath hg19 (UCSC)FANCB  -     chrX:14861529-14891184 -  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FANCB  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblFANCB - Xp22.2 [CytoView hg19]  FANCB - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIFANCB [Mapview hg19]  FANCB [Mapview hg38]
OMIM189960   300514   300515   314390   
Gene and transcription
Genbank (Entrez)AK091383 BC043596 BC055411 BC136558 BC136560
RefSeq transcript (Entrez)NM_001018113 NM_152633
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_007310 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)FANCB
Cluster EST : UnigeneHs.554740 [ NCBI ]
CGAP (NCI)Hs.554740
Alternative Splicing : Fast-db (Paris)GSHG0031982
Alternative Splicing GalleryENSG00000181544
Gene ExpressionFANCB [ NCBI-GEO ]     FANCB [ SEEK ]   FANCB [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)2187
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB91 (Uniprot)
NextProtQ8NB91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB91
Splice isoforms : SwissVarQ8NB91 (Swissvar)
PhosPhoSitePlusQ8NB91
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations2187
Blocks (Seattle)FANCB
Human Protein AtlasENSG00000181544
Peptide AtlasQ8NB91
HPRD06557
IPIIPI00645780   IPI00168187   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB91
IntAct (EBI)Q8NB91
FunCoupENSG00000181544
BioGRIDFANCB
IntegromeDBFANCB
STRING (EMBL)FANCB
ZODIACFANCB
Ontologies - Pathways
QuickGOQ8NB91
Ontology : AmiGOprotein binding  nucleoplasm  DNA repair  interstrand cross-link repair  Fanconi anaemia nuclear complex  
Ontology : EGO-EBIprotein binding  nucleoplasm  DNA repair  interstrand cross-link repair  Fanconi anaemia nuclear complex  
Pathways : KEGGFanconi anemia pathway   
Protein Interaction DatabaseFANCB
Atlas of Cancer Signalling NetworkFANCB
Wikipedia pathwaysFANCB
Orthology - Evolution
OrthoDB2187
GeneTree (enSembl)ENSG00000181544
Phylogenetic Trees/Animal Genes : TreeFamFANCB
Homologs : HomoloGeneFANCB
Homology/Alignments : Family Browser (UCSC)FANCB
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFANCB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANCB
dbVarFANCB
ClinVarFANCB
1000_GenomesFANCB 
Exome Variant ServerFANCB
Exome Aggregation Consortium (ExAC)ENSG00000181544
SNP (GeneSNP Utah)FANCB
SNP : HGBaseFANCB
Genetic variants : HAPMAPFANCB
Genomic Variants (DGV)FANCB [DGVbeta]
Mutations
ICGC Data PortalFANCB 
TCGA Data PortalFANCB 
Tumor PortalFANCB
TCGA Copy Number PortalFANCB
Somatic Mutations in Cancer : COSMICFANCB 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Fanconi anemia database
BioMutasearch FANCB
DgiDB (Drug Gene Interaction Database)FANCB
DoCM (Curated mutations)FANCB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FANCB (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:14861529-14891184
CONAN: Copy Number AnalysisFANCB 
Mutations and Diseases : HGMDFANCB
OMIM189960    300514    300515    314390   
MedgenFANCB
NextProtQ8NB91 [Medical]
TSGene2187
GENETestsFANCB
Huge Navigator FANCB [HugePedia]  FANCB [HugeCancerGEM]
snp3D : Map Gene to Disease2187
BioCentury BCIQFANCB
General knowledge
Chemical/Protein Interactions : CTD2187
Chemical/Pharm GKB GenePA27996
Clinical trialFANCB
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFANCB
GoPubMedFANCB
iHOPFANCB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:36:39 CET 2016

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