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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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FANCB (Fanconi anemia, complementation group B)

Identity

Other namesFA2
FAAP90
FAAP95
FAB
FACB
HGNC (Hugo) FANCB
LocusID (NCBI) 2187
Location Xp22.2
Location_base_pair Starts at 14861529 and ends at 14891184 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FANCB   3583
Cards
Entrez_Gene (NCBI)FANCB  2187  Fanconi anemia, complementation group B
GeneCards (Weizmann)FANCB
Ensembl hg19 (Hinxton)ENSG00000181544 [Gene_View]  chrX:14861529-14891184 [Contig_View]  FANCB [Vega]
Ensembl hg38 (Hinxton)ENSG00000181544 [Gene_View]  chrX:14861529-14891184 [Contig_View]  FANCB [Vega]
ICGC DataPortalENSG00000181544
cBioPortalFANCB
AceView (NCBI)FANCB
Genatlas (Paris)FANCB
WikiGenes2187
SOURCE (Princeton)FANCB
Genomic and cartography
GoldenPath hg19 (UCSC)FANCB  -     chrX:14861529-14891184 -  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FANCB  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblFANCB - Xp22.2 [CytoView hg19]  FANCB - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIFANCB [Mapview hg19]  FANCB [Mapview hg38]
OMIM300514   300515   314390   
Gene and transcription
Genbank (Entrez)AK091383 BC043596 BC055411 BC136558 BC136560
RefSeq transcript (Entrez)NM_001018113 NM_152633
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_007310 NT_167197 NW_001842360 NW_004929438
Consensus coding sequences : CCDS (NCBI)FANCB
Cluster EST : UnigeneHs.554740 [ NCBI ]
CGAP (NCI)Hs.554740
Alternative Splicing : Fast-db (Paris)GSHG0031982
Alternative Splicing GalleryENSG00000181544
Gene ExpressionFANCB [ NCBI-GEO ]     FANCB [ SEEK ]   FANCB [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB91 (Uniprot)
NextProtQ8NB91  [Medical]
With graphics : InterProQ8NB91
Splice isoforms : SwissVarQ8NB91 (Swissvar)
Related proteins : CluSTrQ8NB91
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations2187
Blocks (Seattle)Q8NB91
Human Protein AtlasENSG00000181544
Peptide AtlasQ8NB91
HPRD06557
IPIIPI00645780   IPI00168187   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB91
IntAct (EBI)Q8NB91
FunCoupENSG00000181544
BioGRIDFANCB
IntegromeDBFANCB
STRING (EMBL)FANCB
Ontologies - Pathways
QuickGOQ8NB91
Ontology : AmiGOprotein binding  nucleoplasm  DNA repair  Fanconi anaemia nuclear complex  
Ontology : EGO-EBIprotein binding  nucleoplasm  DNA repair  Fanconi anaemia nuclear complex  
Pathways : KEGGFanconi anemia pathway   
Protein Interaction DatabaseFANCB
DoCM (Curated mutations)FANCB
Wikipedia pathwaysFANCB
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFANCB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANCB
dbVarFANCB
ClinVarFANCB
1000_GenomesFANCB 
Exome Variant ServerFANCB
SNP (GeneSNP Utah)FANCB
SNP : HGBaseFANCB
Genetic variants : HAPMAPFANCB
Genomic Variants (DGV)FANCB [DGVbeta]
Mutations
ICGC Data PortalENSG00000181544 
Somatic Mutations in Cancer : COSMICFANCB 
CONAN: Copy Number AnalysisFANCB 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Fanconi anemia database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:14861529-14891184
Mutations and Diseases : HGMDFANCB
OMIM300514    300515    314390   
MedgenFANCB
NextProtQ8NB91 [Medical]
GENETestsFANCB
Disease Genetic AssociationFANCB
Huge Navigator FANCB [HugePedia]  FANCB [HugeCancerGEM]
snp3D : Map Gene to Disease2187
DGIdb (Drug Gene Interaction db)FANCB
General knowledge
Homologs : HomoloGeneFANCB
Homology/Alignments : Family Browser (UCSC)FANCB
Phylogenetic Trees/Animal Genes : TreeFamFANCB
Chemical/Protein Interactions : CTD2187
Chemical/Pharm GKB GenePA27996
Clinical trialFANCB
Cancer Resource (Charite)ENSG00000181544
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineFANCB
GoPubMedFANCB
iHOPFANCB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:47:22 CET 2015

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