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FANCD2OS (FANCD2 opposite strand)

Identity

Alias_namesC3orf24
chromosome 3 open reading frame 24
Alias_symbol (synonym)MGC40179
Other alias
HGNC (Hugo) FANCD2OS
LocusID (NCBI) 115795
Atlas_Id 63291
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 10104135 and ends at 10108231 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FANCD2OS   28623
Cards
Entrez_Gene (NCBI)FANCD2OS  115795  FANCD2 opposite strand
AliasesC3orf24
GeneCards (Weizmann)FANCD2OS
Ensembl hg19 (Hinxton)ENSG00000163705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163705 [Gene_View]  chr3:10104135-10108231 [Contig_View]  FANCD2OS [Vega]
ICGC DataPortalENSG00000163705
TCGA cBioPortalFANCD2OS
AceView (NCBI)FANCD2OS
Genatlas (Paris)FANCD2OS
WikiGenes115795
SOURCE (Princeton)FANCD2OS
Genetics Home Reference (NIH)FANCD2OS
Genomic and cartography
GoldenPath hg38 (UCSC)FANCD2OS  -     chr3:10104135-10108231 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FANCD2OS  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblFANCD2OS - 3p25.3 [CytoView hg19]  FANCD2OS - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIFANCD2OS [Mapview hg19]  FANCD2OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF230334 AW074860 AY248899 BC028122 HQ447118
RefSeq transcript (Entrez)NM_001164839 NM_173472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FANCD2OS
Cluster EST : UnigeneHs.190413 [ NCBI ]
CGAP (NCI)Hs.190413
Alternative Splicing GalleryENSG00000163705
Gene ExpressionFANCD2OS [ NCBI-GEO ]   FANCD2OS [ EBI - ARRAY_EXPRESS ]   FANCD2OS [ SEEK ]   FANCD2OS [ MEM ]
Gene Expression Viewer (FireBrowse)FANCD2OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115795
GTEX Portal (Tissue expression)FANCD2OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PS1
Splice isoforms : SwissVarQ96PS1
PhosPhoSitePlusQ96PS1
Domains : Interpro (EBI)FANCD2OS   
Domain families : Pfam (Sanger)FANCD2OS (PF15124)   
Domain families : Pfam (NCBI)pfam15124   
Conserved Domain (NCBI)FANCD2OS
DMDM Disease mutations115795
Blocks (Seattle)FANCD2OS
SuperfamilyQ96PS1
Human Protein AtlasENSG00000163705
Peptide AtlasQ96PS1
HPRD17552
IPIIPI00044644   IPI00977536   
Protein Interaction databases
DIP (DOE-UCLA)Q96PS1
IntAct (EBI)Q96PS1
FunCoupENSG00000163705
BioGRIDFANCD2OS
STRING (EMBL)FANCD2OS
ZODIACFANCD2OS
Ontologies - Pathways
QuickGOQ96PS1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFANCD2OS
Atlas of Cancer Signalling NetworkFANCD2OS
Wikipedia pathwaysFANCD2OS
Orthology - Evolution
OrthoDB115795
GeneTree (enSembl)ENSG00000163705
Phylogenetic Trees/Animal Genes : TreeFamFANCD2OS
HOVERGENQ96PS1
HOGENOMQ96PS1
Homologs : HomoloGeneFANCD2OS
Homology/Alignments : Family Browser (UCSC)FANCD2OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFANCD2OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANCD2OS
dbVarFANCD2OS
ClinVarFANCD2OS
1000_GenomesFANCD2OS 
Exome Variant ServerFANCD2OS
ExAC (Exome Aggregation Consortium)FANCD2OS (select the gene name)
Genetic variants : HAPMAP115795
Genomic Variants (DGV)FANCD2OS [DGVbeta]
DECIPHERFANCD2OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFANCD2OS 
Mutations
ICGC Data PortalFANCD2OS 
TCGA Data PortalFANCD2OS 
Broad Tumor PortalFANCD2OS
OASIS PortalFANCD2OS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFANCD2OS
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch FANCD2OS
DgiDB (Drug Gene Interaction Database)FANCD2OS
DoCM (Curated mutations)FANCD2OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FANCD2OS (select a term)
intoGenFANCD2OS
Cancer3DFANCD2OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFANCD2OS
Genetic Testing Registry FANCD2OS
NextProtQ96PS1 [Medical]
TSGene115795
GENETestsFANCD2OS
Target ValidationFANCD2OS
Huge Navigator FANCD2OS [HugePedia]
snp3D : Map Gene to Disease115795
BioCentury BCIQFANCD2OS
ClinGenFANCD2OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115795
Chemical/Pharm GKB GenePA142672385
Clinical trialFANCD2OS
Miscellaneous
canSAR (ICR)FANCD2OS (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFANCD2OS
EVEXFANCD2OS
GoPubMedFANCD2OS
iHOPFANCD2OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:55 CEST 2017

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