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FANCI (Fanconi anemia complementation group I)

Identity

Other namesKIAA1794
HGNC (Hugo) FANCI
LocusID (NCBI) 55215
Atlas_Id 50208
Location 15q26.1
Location_base_pair Starts at 89787194 and ends at 89860362 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FANCI (15q26.1) / YPEL1 (22q11.21)PCGF3 (4p16.3) / FANCI (15q26.1)SETBP1 (18q12.3) / FANCI (15q26.1)
PCGF3 4p16.3 / FANCI 15q26.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 2 ]
  Fanconi anaemia Familial Myeloproliferative Disorders

External links

Nomenclature
HGNC (Hugo)FANCI   25568
Cards
Entrez_Gene (NCBI)FANCI  55215  Fanconi anemia complementation group I
AliasesKIAA1794
GeneCards (Weizmann)FANCI
Ensembl hg19 (Hinxton)ENSG00000140525 [Gene_View]  chr15:89787194-89860362 [Contig_View]  FANCI [Vega]
Ensembl hg38 (Hinxton)ENSG00000140525 [Gene_View]  chr15:89787194-89860362 [Contig_View]  FANCI [Vega]
ICGC DataPortalENSG00000140525
TCGA cBioPortalFANCI
AceView (NCBI)FANCI
Genatlas (Paris)FANCI
WikiGenes55215
SOURCE (Princeton)FANCI
Genomic and cartography
GoldenPath hg19 (UCSC)FANCI  -     chr15:89787194-89860362 +  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FANCI  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblFANCI - 15q26.1 [CytoView hg19]  FANCI - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIFANCI [Mapview hg19]  FANCI [Mapview hg38]
OMIM189960   609053   611360   
Gene and transcription
Genbank (Entrez)AB058697 AK001581 AK027564 AK055176 BC004277
RefSeq transcript (Entrez)NM_001113378 NM_018193
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_011736 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)FANCI
Cluster EST : UnigeneHs.513126 [ NCBI ]
CGAP (NCI)Hs.513126
Alternative Splicing GalleryENSG00000140525
Gene ExpressionFANCI [ NCBI-GEO ]   FANCI [ EBI - ARRAY_EXPRESS ]   FANCI [ SEEK ]   FANCI [ MEM ]
Gene Expression Viewer (FireBrowse)FANCI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55215
GTEX Portal (Tissue expression)FANCI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVI1 (Uniprot)
NextProtQ9NVI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVI1
Splice isoforms : SwissVarQ9NVI1 (Swissvar)
PhosPhoSitePlusQ9NVI1
Domains : Interpro (EBI)FANCI    FANCI_HD1    FANCI_HD2    FANCI_S1    FANCI_S1-cap    FANCI_S2    FANCI_S3    FANCI_S4   
Domain families : Pfam (Sanger)FANCI_HD1 (PF14679)    FANCI_HD2 (PF14680)    FANCI_S1 (PF14675)    FANCI_S1-cap (PF14674)    FANCI_S2 (PF14676)    FANCI_S3 (PF14677)    FANCI_S4 (PF14678)   
Domain families : Pfam (NCBI)pfam14679    pfam14680    pfam14675    pfam14674    pfam14676    pfam14677    pfam14678   
DMDM Disease mutations55215
Blocks (Seattle)FANCI
SuperfamilyQ9NVI1
Human Protein AtlasENSG00000140525
Peptide AtlasQ9NVI1
HPRD13339
IPIIPI00019447   IPI00784704   IPI00306518   IPI00884225   IPI01011483   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVI1
IntAct (EBI)Q9NVI1
FunCoupENSG00000140525
BioGRIDFANCI
STRING (EMBL)FANCI
ZODIACFANCI
Ontologies - Pathways
QuickGOQ9NVI1
Ontology : AmiGODNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  mitotic G2 DNA damage checkpoint  membrane  positive regulation of protein ubiquitination  interstrand cross-link repair  DNA polymerase binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  mitotic G2 DNA damage checkpoint  membrane  positive regulation of protein ubiquitination  interstrand cross-link repair  DNA polymerase binding  
Pathways : KEGGFanconi anemia pathway   
NDEx Network
Atlas of Cancer Signalling NetworkFANCI
Wikipedia pathwaysFANCI
Orthology - Evolution
OrthoDB55215
GeneTree (enSembl)ENSG00000140525
Phylogenetic Trees/Animal Genes : TreeFamFANCI
Homologs : HomoloGeneFANCI
Homology/Alignments : Family Browser (UCSC)FANCI
Gene fusions - Rearrangements
Fusion: TCGAPCGF3 4p16.3 FANCI 15q26.1 LUSC
Polymorphisms : SNP, variants
NCBI Variation ViewerFANCI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANCI
dbVarFANCI
ClinVarFANCI
1000_GenomesFANCI 
Exome Variant ServerFANCI
ExAC (Exome Aggregation Consortium)FANCI (select the gene name)
Genetic variants : HAPMAP55215
Genomic Variants (DGV)FANCI [DGVbeta]
Mutations
ICGC Data PortalFANCI 
TCGA Data PortalFANCI 
Broad Tumor PortalFANCI
OASIS PortalFANCI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFANCI 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)Fanconi anemia database
BioMutasearch FANCI
DgiDB (Drug Gene Interaction Database)FANCI
DoCM (Curated mutations)FANCI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FANCI (select a term)
intoGenFANCI
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:89787194-89860362  ENSG00000140525
CONAN: Copy Number AnalysisFANCI 
Mutations and Diseases : HGMDFANCI
OMIM189960    609053    611360   
MedgenFANCI
Genetic Testing Registry FANCI
NextProtQ9NVI1 [Medical]
TSGene55215
GENETestsFANCI
Huge Navigator FANCI [HugePedia]
snp3D : Map Gene to Disease55215
BioCentury BCIQFANCI
ClinGenFANCI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55215
Chemical/Pharm GKB GenePA162387928
Clinical trialFANCI
Miscellaneous
canSAR (ICR)FANCI (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFANCI
EVEXFANCI
GoPubMedFANCI
iHOPFANCI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:02:23 CEST 2016

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