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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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FANCI (Fanconi anemia, complementation group I)

Identity

Other namesKIAA1794
HGNC (Hugo) FANCI
LocusID (NCBI) 55215
Location 15q26.1
Location_base_pair Starts at 89787194 and ends at 89860362 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FANCI   25568
Cards
Entrez_Gene (NCBI)FANCI  55215  Fanconi anemia, complementation group I
GeneCards (Weizmann)FANCI
Ensembl hg19 (Hinxton)ENSG00000140525 [Gene_View]  chr15:89787194-89860362 [Contig_View]  FANCI [Vega]
Ensembl hg38 (Hinxton)ENSG00000140525 [Gene_View]  chr15:89787194-89860362 [Contig_View]  FANCI [Vega]
ICGC DataPortalENSG00000140525
cBioPortalFANCI
AceView (NCBI)FANCI
Genatlas (Paris)FANCI
WikiGenes55215
SOURCE (Princeton)FANCI
Genomic and cartography
GoldenPath hg19 (UCSC)FANCI  -     chr15:89787194-89860362 +  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FANCI  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblFANCI - 15q26.1 [CytoView hg19]  FANCI - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIFANCI [Mapview hg19]  FANCI [Mapview hg38]
OMIM609053   611360   
Gene and transcription
Genbank (Entrez)AB058697 AK001581 AK027564 AK055176 BC004277
RefSeq transcript (Entrez)NM_001113378 NM_018193
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_011736 NT_010194 NW_001838222 NW_004929399
Consensus coding sequences : CCDS (NCBI)FANCI
Cluster EST : UnigeneHs.513126 [ NCBI ]
CGAP (NCI)Hs.513126
Alternative Splicing : Fast-db (Paris)GSHG0010131
Alternative Splicing GalleryENSG00000140525
Gene ExpressionFANCI [ NCBI-GEO ]     FANCI [ SEEK ]   FANCI [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVI1 (Uniprot)
NextProtQ9NVI1  [Medical]
With graphics : InterProQ9NVI1
Splice isoforms : SwissVarQ9NVI1 (Swissvar)
Domains : Interpro (EBI)FANCI    FANCI_HD1    FANCI_HD2    FANCI_S1    FANCI_S1-cap    FANCI_S2    FANCI_S3    FANCI_S4   
Related proteins : CluSTrQ9NVI1
Domain families : Pfam (Sanger)FANCI_HD1 (PF14679)    FANCI_HD2 (PF14680)    FANCI_S1 (PF14675)    FANCI_S1-cap (PF14674)    FANCI_S2 (PF14676)    FANCI_S3 (PF14677)    FANCI_S4 (PF14678)   
Domain families : Pfam (NCBI)pfam14679    pfam14680    pfam14675    pfam14674    pfam14676    pfam14677    pfam14678   
DMDM Disease mutations55215
Blocks (Seattle)Q9NVI1
Human Protein AtlasENSG00000140525
Peptide AtlasQ9NVI1
HPRD13339
IPIIPI00019447   IPI00784704   IPI00306518   IPI00884225   IPI01011483   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVI1
IntAct (EBI)Q9NVI1
FunCoupENSG00000140525
BioGRIDFANCI
IntegromeDBFANCI
STRING (EMBL)FANCI
Ontologies - Pathways
QuickGOQ9NVI1
Ontology : AmiGODNA binding  protein binding  nucleoplasm  DNA repair  cell cycle  membrane  positive regulation of protein ubiquitination  DNA polymerase binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  DNA repair  cell cycle  membrane  positive regulation of protein ubiquitination  DNA polymerase binding  
Pathways : KEGGFanconi anemia pathway   
Protein Interaction DatabaseFANCI
DoCM (Curated mutations)FANCI
Wikipedia pathwaysFANCI
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFANCI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANCI
dbVarFANCI
ClinVarFANCI
1000_GenomesFANCI 
Exome Variant ServerFANCI
SNP (GeneSNP Utah)FANCI
SNP : HGBaseFANCI
Genetic variants : HAPMAPFANCI
Genomic Variants (DGV)FANCI [DGVbeta]
Mutations
ICGC Data PortalENSG00000140525 
Somatic Mutations in Cancer : COSMICFANCI 
CONAN: Copy Number AnalysisFANCI 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)Fanconi anemia database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:89787194-89860362
Mutations and Diseases : HGMDFANCI
OMIM609053    611360   
MedgenFANCI
NextProtQ9NVI1 [Medical]
GENETestsFANCI
Disease Genetic AssociationFANCI
Huge Navigator FANCI [HugePedia]  FANCI [HugeCancerGEM]
snp3D : Map Gene to Disease55215
DGIdb (Drug Gene Interaction db)FANCI
General knowledge
Homologs : HomoloGeneFANCI
Homology/Alignments : Family Browser (UCSC)FANCI
Phylogenetic Trees/Animal Genes : TreeFamFANCI
Chemical/Protein Interactions : CTD55215
Chemical/Pharm GKB GenePA162387928
Clinical trialFANCI
Cancer Resource (Charite)ENSG00000140525
Other databases
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
CoreMineFANCI
GoPubMedFANCI
iHOPFANCI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:47:23 CET 2015

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