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FANCI (Fanconi anemia, complementation group I)

Identity

Other namesKIAA1794
HGNC (Hugo) FANCI
LocusID (NCBI) 55215
Location 15q26.1
Location_base_pair Starts at 89787194 and ends at 89860362 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FANCI   25568
Cards
Entrez_Gene (NCBI)FANCI  55215  Fanconi anemia, complementation group I
GeneCards (Weizmann)FANCI
Ensembl (Hinxton)ENSG00000140525 [Gene_View]  chr15:89787194-89860362 [Contig_View]  FANCI [Vega]
ICGC DataPortalENSG00000140525
cBioPortalFANCI
AceView (NCBI)FANCI
Genatlas (Paris)FANCI
WikiGenes55215
SOURCE (Princeton)NM_001113378 NM_018193
Genomic and cartography
GoldenPath (UCSC)FANCI  -  15q26.1   chr15:89787194-89860362 +  15q26.1   [Description]    (hg19-Feb_2009)
EnsemblFANCI - 15q26.1 [CytoView]
Mapping of homologs : NCBIFANCI [Mapview]
OMIM609053   611360   
Gene and transcription
Genbank (Entrez)AB058697 AK001581 AK027564 AK055176 BC004277
RefSeq transcript (Entrez)NM_001113378 NM_018193
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_011736 NT_010194 NW_001838222 NW_004929399
Consensus coding sequences : CCDS (NCBI)FANCI
Cluster EST : UnigeneHs.513126 [ NCBI ]
CGAP (NCI)Hs.513126
Alternative Splicing : Fast-db (Paris)GSHG0010131
Alternative Splicing GalleryENSG00000140525
Gene ExpressionFANCI [ NCBI-GEO ]     FANCI [ SEEK ]   FANCI [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVI1 (Uniprot)
NextProtQ9NVI1  [Medical]
With graphics : InterProQ9NVI1
Splice isoforms : SwissVarQ9NVI1 (Swissvar)
Domains : Interpro (EBI)FANCI [organisation]   FANCI_HD1 [organisation]   FANCI_HD2 [organisation]   FANCI_S1 [organisation]   FANCI_S1-cap [organisation]   FANCI_S2 [organisation]   FANCI_S3 [organisation]   FANCI_S4 [organisation]  
Related proteins : CluSTrQ9NVI1
Domain families : Pfam (Sanger)FANCI_HD1 (PF14679)    FANCI_HD2 (PF14680)    FANCI_S1 (PF14675)    FANCI_S1-cap (PF14674)    FANCI_S2 (PF14676)    FANCI_S3 (PF14677)    FANCI_S4 (PF14678)   
Domain families : Pfam (NCBI)pfam14679    pfam14680    pfam14675    pfam14674    pfam14676    pfam14677    pfam14678   
DMDM Disease mutations55215
Blocks (Seattle)Q9NVI1
Human Protein AtlasENSG00000140525 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9NVI1
HPRD13339
IPIIPI00019447   IPI00784704   IPI00306518   IPI00884225   IPI01011483   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVI1
IntAct (EBI)Q9NVI1
FunCoupENSG00000140525
BioGRIDFANCI
InParanoidQ9NVI1
Interologous Interaction database Q9NVI1
IntegromeDBFANCI
STRING (EMBL)FANCI
Ontologies - Pathways
Ontology : AmiGODNA binding  protein binding  nucleoplasm  DNA repair  cell cycle  membrane  positive regulation of protein ubiquitination  DNA polymerase binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  DNA repair  cell cycle  membrane  positive regulation of protein ubiquitination  DNA polymerase binding  
Pathways : KEGGFanconi anemia pathway   
Protein Interaction DatabaseFANCI
Wikipedia pathwaysFANCI
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FANCI
snp3D : Map Gene to Disease55215
SNP (GeneSNP Utah)FANCI
SNP : HGBaseFANCI
Genetic variants : HAPMAPFANCI
Exome VariantFANCI
1000_GenomesFANCI 
ICGC programENSG00000140525 
Somatic Mutations in Cancer : COSMICFANCI 
CONAN: Copy Number AnalysisFANCI 
Mutations and Diseases : HGMDFANCI
Genomic VariantsFANCI  FANCI [DGVbeta]
dbVarFANCI
ClinVarFANCI
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM609053    611360   
MedgenFANCI
GENETestsFANCI
Disease Genetic AssociationFANCI
Huge Navigator FANCI [HugePedia]  FANCI [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneFANCI
Homology/Alignments : Family Browser (UCSC)FANCI
Phylogenetic Trees/Animal Genes : TreeFamFANCI
Chemical/Protein Interactions : CTD55215
Chemical/Pharm GKB GenePA162387928
Clinical trialFANCI
Cancer Resource (Charite)ENSG00000140525
Other databases
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
CoreMineFANCI
iHOPFANCI
OncoSearchFANCI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:31:29 CEST 2014

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