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FANCI (Fanconi anemia, complementation group I)

Identity

Other namesKIAA1794
HGNC (Hugo) FANCI
LocusID (NCBI) 55215
Location 15q26.1
Location_base_pair Starts at 89787194 and ends at 89860362 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FANCI   25568
Cards
Entrez_Gene (NCBI)FANCI  55215  Fanconi anemia, complementation group I
GeneCards (Weizmann)FANCI
Ensembl (Hinxton)ENSG00000140525 [Gene_View]  chr15:89787194-89860362 [Contig_View]  FANCI [Vega]
ICGC DataPortalENSG00000140525
AceView (NCBI)FANCI
Genatlas (Paris)FANCI
WikiGenes55215
SOURCE (Princeton)NM_001113378 NM_018193
Genomic and cartography
GoldenPath (UCSC)FANCI  -  15q26.1   chr15:89787194-89860362 +  15q26.1   [Description]    (hg19-Feb_2009)
EnsemblFANCI - 15q26.1 [CytoView]
Mapping of homologs : NCBIFANCI [Mapview]
OMIM609053   611360   
Gene and transcription
Genbank (Entrez)AB058697 AK001581 AK027564 AK055176 BC004277
RefSeq transcript (Entrez)NM_001113378 NM_018193
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_011736 NT_010194 NW_001838222 NW_004929399
Consensus coding sequences : CCDS (NCBI)FANCI
Cluster EST : UnigeneHs.513126 [ NCBI ]
CGAP (NCI)Hs.513126
Alternative Splicing : Fast-db (Paris)GSHG0010131
Alternative Splicing GalleryENSG00000140525
Gene ExpressionFANCI [ NCBI-GEO ]     FANCI [ SEEK ]   FANCI [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVI1 (Uniprot)
NextProtQ9NVI1  [Medical]
With graphics : InterProQ9NVI1
Splice isoforms : SwissVarQ9NVI1 (Swissvar)
Domains : Interpro (EBI)FANCI    FANCI_HD1    FANCI_HD2    FANCI_S1    FANCI_S1-cap    FANCI_S2    FANCI_S3    FANCI_S4   
Related proteins : CluSTrQ9NVI1
Domain families : Pfam (Sanger)FANCI_HD1 (PF14679)    FANCI_HD2 (PF14680)    FANCI_S1 (PF14675)    FANCI_S1-cap (PF14674)    FANCI_S2 (PF14676)    FANCI_S3 (PF14677)    FANCI_S4 (PF14678)   
Domain families : Pfam (NCBI)pfam14679    pfam14680    pfam14675    pfam14674    pfam14676    pfam14677    pfam14678   
DMDM Disease mutations55215
Blocks (Seattle)Q9NVI1
Human Protein AtlasENSG00000140525
Peptide AtlasQ9NVI1
HPRD13339
IPIIPI00019447   IPI00784704   IPI00306518   IPI00884225   IPI01011483   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVI1
IntAct (EBI)Q9NVI1
FunCoupENSG00000140525
BioGRIDFANCI
InParanoidQ9NVI1
Interologous Interaction database Q9NVI1
IntegromeDBFANCI
STRING (EMBL)FANCI
Ontologies - Pathways
Ontology : AmiGODNA binding  protein binding  nucleoplasm  DNA repair  cell cycle  membrane  positive regulation of protein ubiquitination  DNA polymerase binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  DNA repair  cell cycle  membrane  positive regulation of protein ubiquitination  DNA polymerase binding  
Pathways : KEGGFanconi anemia pathway   
Protein Interaction DatabaseFANCI
Wikipedia pathwaysFANCI
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FANCI
SNP (GeneSNP Utah)FANCI
SNP : HGBaseFANCI
Genetic variants : HAPMAPFANCI
1000_GenomesFANCI 
ICGC programENSG00000140525 
CONAN: Copy Number AnalysisFANCI 
Somatic Mutations in Cancer : COSMICFANCI 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)Fanconi anemia database
Mutations and Diseases : HGMDFANCI
OMIM609053    611360   
MedgenFANCI
GENETestsFANCI
Disease Genetic AssociationFANCI
Huge Navigator FANCI [HugePedia]  FANCI [HugeCancerGEM]
Genomic VariantsFANCI  FANCI [DGVbeta]
Exome VariantFANCI
dbVarFANCI
ClinVarFANCI
snp3D : Map Gene to Disease55215
General knowledge
Homologs : HomoloGeneFANCI
Homology/Alignments : Family Browser (UCSC)FANCI
Phylogenetic Trees/Animal Genes : TreeFamFANCI
Chemical/Protein Interactions : CTD55215
Chemical/Pharm GKB GenePA162387928
Clinical trialFANCI
Cancer Resource (Charite)ENSG00000140525
Other databases
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
CoreMineFANCI
iHOPFANCI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:45:54 CEST 2014

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