Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FANCL (FA complementation group L)

Identity

Alias_namesPHF9
PHD finger protein 9
Alias_symbol (synonym)FLJ10335
FAAP43
Pog
Other aliasPOG
HGNC (Hugo) FANCL
LocusID (NCBI) 55120
Atlas_Id 40529
Location 2p16.1  [Link to chromosome band 2p16]
Location_base_pair Starts at 58159243 and ends at 58241380 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FANCL (2p16.1) / FANCL (2p16.1)FANCL (2p16.1) / TSPAN12 (7q31.31)VRK2 (2p16.1) / FANCL (2p16.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 2 ]
  Fanconi anemia Familial Myeloproliferative Disorders

External links

Nomenclature
HGNC (Hugo)FANCL   20748
LRG (Locus Reference Genomic)LRG_501
Cards
Entrez_Gene (NCBI)FANCL  55120  FA complementation group L
AliasesFAAP43; PHF9; POG
GeneCards (Weizmann)FANCL
Ensembl hg19 (Hinxton)ENSG00000115392 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115392 [Gene_View]  ENSG00000115392 [Sequence]  chr2:58159243-58241380 [Contig_View]  FANCL [Vega]
ICGC DataPortalENSG00000115392
TCGA cBioPortalFANCL
AceView (NCBI)FANCL
Genatlas (Paris)FANCL
WikiGenes55120
SOURCE (Princeton)FANCL
Genetics Home Reference (NIH)FANCL
Genomic and cartography
GoldenPath hg38 (UCSC)FANCL  -     chr2:58159243-58241380 -  2p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FANCL  -     2p16.1   [Description]    (hg19-Feb_2009)
EnsemblFANCL - 2p16.1 [CytoView hg19]  FANCL - 2p16.1 [CytoView hg38]
Mapping of homologs : NCBIFANCL [Mapview hg19]  FANCL [Mapview hg38]
OMIM608111   614083   
Gene and transcription
Genbank (Entrez)AK001197 AK225147 AK297736 AK309671 AL036481
RefSeq transcript (Entrez)NM_001114636 NM_018062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FANCL
Cluster EST : UnigeneHs.631890 [ NCBI ]
CGAP (NCI)Hs.631890
Alternative Splicing GalleryENSG00000115392
Gene ExpressionFANCL [ NCBI-GEO ]   FANCL [ EBI - ARRAY_EXPRESS ]   FANCL [ SEEK ]   FANCL [ MEM ]
Gene Expression Viewer (FireBrowse)FANCL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55120
GTEX Portal (Tissue expression)FANCL
Human Protein AtlasENSG00000115392-FANCL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW38
Splice isoforms : SwissVarQ9NW38
PhosPhoSitePlusQ9NW38
Domains : Interpro (EBI)Fancl    FANCL_C    FancL_WD-rpt_cont_dom    UBQ-conjugating_enzyme/RWD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FANCL_C (PF11793)    WD-3 (PF09765)   
Domain families : Pfam (NCBI)pfam11793    pfam09765   
Conserved Domain (NCBI)FANCL
DMDM Disease mutations55120
Blocks (Seattle)FANCL
PDB (SRS)3ZQS    4CCG   
PDB (PDBSum)3ZQS    4CCG   
PDB (IMB)3ZQS    4CCG   
PDB (RSDB)3ZQS    4CCG   
Structural Biology KnowledgeBase3ZQS    4CCG   
SCOP (Structural Classification of Proteins)3ZQS    4CCG   
CATH (Classification of proteins structures)3ZQS    4CCG   
SuperfamilyQ9NW38
Human Protein Atlas [tissue]ENSG00000115392-FANCL [tissue]
Peptide AtlasQ9NW38
HPRD06997
IPIIPI00018099   IPI00885015   IPI00894167   IPI00894304   IPI00894380   IPI00894516   IPI00892593   IPI00892731   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW38
IntAct (EBI)Q9NW38
FunCoupENSG00000115392
BioGRIDFANCL
STRING (EMBL)FANCL
ZODIACFANCL
Ontologies - Pathways
QuickGOQ9NW38
Ontology : AmiGOubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  nuclear envelope  nucleoplasm  cytoplasm  DNA repair  protein monoubiquitination  cellular response to DNA damage stimulus  gamete generation  nuclear body  ubiquitin protein ligase binding  interstrand cross-link repair  regulation of cell proliferation  intracellular membrane-bounded organelle  Fanconi anaemia nuclear complex  metal ion binding  ubiquitin protein ligase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  nuclear envelope  nucleoplasm  cytoplasm  DNA repair  protein monoubiquitination  cellular response to DNA damage stimulus  gamete generation  nuclear body  ubiquitin protein ligase binding  interstrand cross-link repair  regulation of cell proliferation  intracellular membrane-bounded organelle  Fanconi anaemia nuclear complex  metal ion binding  ubiquitin protein ligase activity  
Pathways : KEGGFanconi anemia pathway    Ubiquitin mediated proteolysis   
NDEx NetworkFANCL
Atlas of Cancer Signalling NetworkFANCL
Wikipedia pathwaysFANCL
Orthology - Evolution
OrthoDB55120
GeneTree (enSembl)ENSG00000115392
Phylogenetic Trees/Animal Genes : TreeFamFANCL
HOVERGENQ9NW38
HOGENOMQ9NW38
Homologs : HomoloGeneFANCL
Homology/Alignments : Family Browser (UCSC)FANCL
Gene fusions - Rearrangements
Fusion : QuiverFANCL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFANCL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANCL
dbVarFANCL
ClinVarFANCL
1000_GenomesFANCL 
Exome Variant ServerFANCL
ExAC (Exome Aggregation Consortium)ENSG00000115392
GNOMAD BrowserENSG00000115392
Varsome BrowserFANCL
Genetic variants : HAPMAP55120
Genomic Variants (DGV)FANCL [DGVbeta]
DECIPHERFANCL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFANCL 
Mutations
ICGC Data PortalFANCL 
TCGA Data PortalFANCL 
Broad Tumor PortalFANCL
OASIS PortalFANCL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFANCL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFANCL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Fanconi anemia database
BioMutasearch FANCL
DgiDB (Drug Gene Interaction Database)FANCL
DoCM (Curated mutations)FANCL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FANCL (select a term)
intoGenFANCL
Cancer3DFANCL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608111    614083   
Orphanet634   
DisGeNETFANCL
MedgenFANCL
Genetic Testing Registry FANCL
NextProtQ9NW38 [Medical]
TSGene55120
GENETestsFANCL
Target ValidationFANCL
Huge Navigator FANCL [HugePedia]
snp3D : Map Gene to Disease55120
BioCentury BCIQFANCL
ClinGenFANCL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55120
Chemical/Pharm GKB GenePA134887656
Clinical trialFANCL
Miscellaneous
canSAR (ICR)FANCL (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFANCL
EVEXFANCL
GoPubMedFANCL
iHOPFANCL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:05:51 CET 2018
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