Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FANK1 (fibronectin type III and ankyrin repeat domains 1)

Identity

Alias_namesfibronectin type 3 and ankyrin repeat domains 1
Other aliasHSD13
HGNC (Hugo) FANK1
LocusID (NCBI) 92565
Atlas_Id 63292
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 127585108 and ends at 127698161 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GNB1 (1p36.33) / FANK1 (10q26.2)LHPP (10q26.13) / FANK1 (10q26.2)WBP4 (13q14.11) / FANK1 (10q26.2)
WBP4 FANK1LHPP FANK1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FANK1   23527
Cards
Entrez_Gene (NCBI)FANK1  92565  fibronectin type III and ankyrin repeat domains 1
AliasesHSD13
GeneCards (Weizmann)FANK1
Ensembl hg19 (Hinxton)ENSG00000203780 [Gene_View]  chr10:127585108-127698161 [Contig_View]  FANK1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203780 [Gene_View]  chr10:127585108-127698161 [Contig_View]  FANK1 [Vega]
ICGC DataPortalENSG00000203780
TCGA cBioPortalFANK1
AceView (NCBI)FANK1
Genatlas (Paris)FANK1
WikiGenes92565
SOURCE (Princeton)FANK1
Genetics Home Reference (NIH)FANK1
Genomic and cartography
GoldenPath hg19 (UCSC)FANK1  -     chr10:127585108-127698161 +  10q26.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FANK1  -     10q26.2   [Description]    (hg38-Dec_2013)
EnsemblFANK1 - 10q26.2 [CytoView hg19]  FANK1 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIFANK1 [Mapview hg19]  FANK1 [Mapview hg38]
OMIM611640   
Gene and transcription
Genbank (Entrez)AK021437 AK304407 AY251163 AY358154 BC024189
RefSeq transcript (Entrez)NM_145235
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)FANK1
Cluster EST : UnigeneHs.352591 [ NCBI ]
CGAP (NCI)Hs.352591
Alternative Splicing GalleryENSG00000203780
Gene ExpressionFANK1 [ NCBI-GEO ]   FANK1 [ EBI - ARRAY_EXPRESS ]   FANK1 [ SEEK ]   FANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)FANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92565
GTEX Portal (Tissue expression)FANK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC84
Splice isoforms : SwissVarQ8TC84
PhosPhoSitePlusQ8TC84
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    FN3 (PS50853)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  FN3 (SM00060)  
Conserved Domain (NCBI)FANK1
DMDM Disease mutations92565
Blocks (Seattle)FANK1
SuperfamilyQ8TC84
Human Protein AtlasENSG00000203780
Peptide AtlasQ8TC84
HPRD09945
IPIIPI00152310   IPI00432772   IPI00556003   IPI00953437   IPI00641795   IPI00643216   IPI00644637   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC84
IntAct (EBI)Q8TC84
FunCoupENSG00000203780
BioGRIDFANK1
STRING (EMBL)FANK1
ZODIACFANK1
Ontologies - Pathways
QuickGOQ8TC84
Ontology : AmiGOnucleoplasm  cytoplasm  
Ontology : EGO-EBInucleoplasm  cytoplasm  
NDEx NetworkFANK1
Atlas of Cancer Signalling NetworkFANK1
Wikipedia pathwaysFANK1
Orthology - Evolution
OrthoDB92565
GeneTree (enSembl)ENSG00000203780
Phylogenetic Trees/Animal Genes : TreeFamFANK1
HOVERGENQ8TC84
HOGENOMQ8TC84
Homologs : HomoloGeneFANK1
Homology/Alignments : Family Browser (UCSC)FANK1
Gene fusions - Rearrangements
Fusion: TCGAWBP4 FANK1
Fusion: TCGALHPP FANK1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANK1
dbVarFANK1
ClinVarFANK1
1000_GenomesFANK1 
Exome Variant ServerFANK1
ExAC (Exome Aggregation Consortium)FANK1 (select the gene name)
Genetic variants : HAPMAP92565
Genomic Variants (DGV)FANK1 [DGVbeta]
DECIPHER (Syndromes)10:127585108-127698161  ENSG00000203780
CONAN: Copy Number AnalysisFANK1 
Mutations
ICGC Data PortalFANK1 
TCGA Data PortalFANK1 
Broad Tumor PortalFANK1
OASIS PortalFANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFANK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFANK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FANK1
DgiDB (Drug Gene Interaction Database)FANK1
DoCM (Curated mutations)FANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FANK1 (select a term)
intoGenFANK1
Cancer3DFANK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611640   
Orphanet
MedgenFANK1
Genetic Testing Registry FANK1
NextProtQ8TC84 [Medical]
TSGene92565
GENETestsFANK1
Huge Navigator FANK1 [HugePedia]
snp3D : Map Gene to Disease92565
BioCentury BCIQFANK1
ClinGenFANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92565
Chemical/Pharm GKB GenePA134976727
Clinical trialFANK1
Miscellaneous
canSAR (ICR)FANK1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFANK1
EVEXFANK1
GoPubMedFANK1
iHOPFANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.