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FANK1 (fibronectin type III and ankyrin repeat domains 1)

Identity

Other aliasHSD13
HGNC (Hugo) FANK1
LocusID (NCBI) 92565
Atlas_Id 56807
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 125896539 and ends at 126009592 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNB1 (1p36.33) / FANK1 (10q26.2)LHPP (10q26.13) / FANK1 (10q26.2)WBP4 (13q14.11) / FANK1 (10q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FANK1   23527
Cards
Entrez_Gene (NCBI)FANK1  92565  fibronectin type III and ankyrin repeat domains 1
AliasesHSD13
GeneCards (Weizmann)FANK1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:125896539-126009592 [Contig_View]  FANK1 [Vega]
TCGA cBioPortalFANK1
AceView (NCBI)FANK1
Genatlas (Paris)FANK1
WikiGenes92565
SOURCE (Princeton)FANK1
Genetics Home Reference (NIH)FANK1
Genomic and cartography
GoldenPath hg38 (UCSC)FANK1  -     chr10:125896539-126009592 +  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FANK1  -     10q26.2   [Description]    (hg19-Feb_2009)
EnsemblFANK1 - 10q26.2 [CytoView hg19]  FANK1 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIFANK1 [Mapview hg19]  FANK1 [Mapview hg38]
OMIM611640   
Gene and transcription
Genbank (Entrez)AK021437 AK304407 AY251163 AY358154 BC024189
RefSeq transcript (Entrez)NM_001350939 NM_145235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FANK1
Cluster EST : UnigeneHs.352591 [ NCBI ]
CGAP (NCI)Hs.352591
Gene ExpressionFANK1 [ NCBI-GEO ]   FANK1 [ EBI - ARRAY_EXPRESS ]   FANK1 [ SEEK ]   FANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)FANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92565
GTEX Portal (Tissue expression)FANK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC84
Splice isoforms : SwissVarQ8TC84
PhosPhoSitePlusQ8TC84
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    FN3 (PS50853)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  FN3 (SM00060)  
Conserved Domain (NCBI)FANK1
DMDM Disease mutations92565
Blocks (Seattle)FANK1
SuperfamilyQ8TC84
Peptide AtlasQ8TC84
IPIIPI00152310   IPI00432772   IPI00556003   IPI00953437   IPI00641795   IPI00643216   IPI00644637   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC84
IntAct (EBI)Q8TC84
BioGRIDFANK1
STRING (EMBL)FANK1
ZODIACFANK1
Ontologies - Pathways
QuickGOQ8TC84
Ontology : AmiGOnucleoplasm  cytoplasm  
Ontology : EGO-EBInucleoplasm  cytoplasm  
NDEx NetworkFANK1
Atlas of Cancer Signalling NetworkFANK1
Wikipedia pathwaysFANK1
Orthology - Evolution
OrthoDB92565
Phylogenetic Trees/Animal Genes : TreeFamFANK1
HOVERGENQ8TC84
HOGENOMQ8TC84
Homologs : HomoloGeneFANK1
Homology/Alignments : Family Browser (UCSC)FANK1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FANK1
dbVarFANK1
ClinVarFANK1
1000_GenomesFANK1 
Exome Variant ServerFANK1
ExAC (Exome Aggregation Consortium)FANK1 (select the gene name)
Genetic variants : HAPMAP92565
Genomic Variants (DGV)FANK1 [DGVbeta]
DECIPHERFANK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFANK1 
Mutations
ICGC Data PortalFANK1 
TCGA Data PortalFANK1 
Broad Tumor PortalFANK1
OASIS PortalFANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFANK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFANK1
BioMutasearch FANK1
DgiDB (Drug Gene Interaction Database)FANK1
DoCM (Curated mutations)FANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FANK1 (select a term)
intoGenFANK1
Cancer3DFANK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611640   
Orphanet
MedgenFANK1
Genetic Testing Registry FANK1
NextProtQ8TC84 [Medical]
TSGene92565
GENETestsFANK1
Target ValidationFANK1
Huge Navigator FANK1 [HugePedia]
snp3D : Map Gene to Disease92565
BioCentury BCIQFANK1
ClinGenFANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92565
Chemical/Pharm GKB GenePA134976727
Clinical trialFANK1
Miscellaneous
canSAR (ICR)FANK1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFANK1
EVEXFANK1
GoPubMedFANK1
iHOPFANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:07:53 CEST 2017

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